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Schema
Citing CMDGA
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Annotation type
16
gene expression
2
candidate regulatory elements
1
accessible chromatin
1
binding sites
1
chromatin state
1
target gene predictions
1
variant allelic effects
Annotation Category
3
cis-regulatory elements
Annotation type Category
3
ChIP-seq
2
DNase-seq
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
12
foreskin keratinocyte
8
endothelial cell of umbilical vein
7
keratinocyte
7
mammary epithelial cell
6
bronchial epithelial cell
6
dermis blood vessel endothelial cell
6
endothelial cell of hepatic sinusoid
6
esophagus squamous epithelium
5
breast epithelium
5
epithelial cell of prostate
5
mammary gland epithelial cell
4
choroid plexus epithelial cell
4
hepatocyte
4
myoepithelial cell of mammary gland
4
retinal pigment epithelial cell
3
dermis lymphatic vessel endothelial cell
3
dermis microvascular lymphatic vessel endothelial cell
3
epithelial cell of proximal tubule
3
kidney tubule cell
3
lung microvascular endothelial cell
3
pulmonary artery endothelial cell
2
brain microvascular endothelial cell
2
endothelial cell
2
epithelial cell of esophagus
2
glomerular endothelial cell
2
glomerular visceral epithelial cell
2
iris pigment epithelial cell
2
kidney epithelial cell
2
kidney glomerular epithelial cell
2
non-pigmented ciliary epithelial cell
2
pancreatic ductal cell
2
renal cortical epithelial cell
2
tracheal epithelial cell
1
amniotic epithelial cell
1
aortic endothelial cell
1
colon epithelial cell
1
endothelial cell of coronary artery
1
epidermal melanocyte
1
epithelial cell of amnion
1
kidney capillary endothelial cell
1
kidney epithelium
luminal epithelial cell of mammary gland
1
meso-epithelial cell
1
renal connecting tubule
1
vein endothelial cell
Organ
3
epithelium
3
kidney
Life stage
2
unknown
Date released
1
February, 2021
1
October, 2022
1
September, 2022
Software used
1
chromhmm
1
encode-ccres
1
r
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
biosample_term_name!
luminal epithelial cell of mammary gland
Showing 3 of 3 results
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Download
FileSet
DSR081IKY
released
Annotation file set
: Binding sites annotation for epithelial cell of proximal tubule (RPTEC) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR691IGQ
released
Annotation file set
: Candidate regulatory elements for BSS00310 epithelial cell of proximal tubule from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR711XKR
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE epithelial cell of proximal tubule
Lab:
AMP-T2D consortium
Project:
AMP