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Schema
Citing CMDGA
Clear Filters
Annotation type
16
gene expression
3
accessible chromatin
2
candidate regulatory elements
1
binding sites
1
chromatin state
1
target gene predictions
1
variant allelic effects
Annotation Category
3
cis-regulatory elements
1
Target gene links
Annotation type Category
2
DNase-seq
2
snATAC-seq
1
ChIP-seq
Available data
4
bed bed3+
3
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
23
endothelial cell
20
pigmented layer of retina
12
hepatocyte
11
pancreatic beta cell
11
pancreatic ductal cell
10
pancreatic acinar cell
10
pancreatic alpha cell
10
retinal pigment epithelial cell
9
EndoC_BH1
9
pancreatic delta cell
7
colon epithelial cell
7
keratinocyte
6
endothelial cell of hepatic sinusoid
6
endothelial cell of umbilical vein
6
mammary gland epithelial cell
6
type II pneumocyte
5
cortical cell of adrenal gland
5
foreskin keratinocyte
5
luminal epithelial cell of mammary gland
4
breast epithelium
4
endothelial cell of lymphatic vessel
4
epithelial cell of prostate
4
glomerular visceral epithelial cell
4
kidney tubule cell
4
pancreatic A cell
4
type B pancreatic cell
4
type I pneumocyte
3
bronchial epithelial cell
3
choroid plexus epithelial cell
3
club cell
3
endocardial cell
3
enterocyte
3
esophagus squamous epithelium
3
glomerular endothelial cell
3
kidney glomerular epithelial cell
3
mesothelial cell
3
pancreatic polypeptide-secreting cell
3
renal cortical epithelial cell
2
aortic endothelial cell
2
basal cell of epidermis
2
brain microvascular endothelial cell
2
capillary endothelial cell
2
cardiac endothelial cell
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
eccrine cell
2
enterochromaffin-like cell
2
enterocyte of epithelium of small intestine
2
epithelial cell of proximal tubule
2
foveolar cell of stomach
2
granular cell of epidermis
2
iris pigment epithelial cell
2
kidney capillary endothelial cell
2
kidney epithelial cell
2
mammary epithelial cell
2
myoepithelial cell
2
myoepithelial cell of mammary gland
2
non keratinizing barrier epithelial cell
2
non-pigmented ciliary epithelial cell
2
paneth cell
2
parietal cell
2
peptic cell
2
pulmonary artery endothelial cell
2
respiratory goblet cell
2
small intestine goblet cell
2
stomach neuroendocrine cell
2
thyroid follicular cell
2
type I cell of adrenal cortex
2
type II cell of adrenal cortex
1
cholangiocyte
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
dermis microvascular lymphatic vessel endothelial cell
1
enteroendocrine cell
1
epidermal melanocyte
1
epithelial cell of amnion
1
epithelial cell of esophagus
1
gastric goblet cell
1
glomerular epithelium
1
goblet cell
1
kidney distal convoluted tubule epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
lung microvascular endothelial cell
1
lung neuroendocrine cell
1
neuroendocrine cell
1
pancreatic D cell
1
pancreatic PP cell
1
pancreatic endothelial cell
1
parietal epithelial cell
1
placental villus capillary endothelial cell
1
renal cortex tubule
1
renal intercalated cell
1
renal principal cell
1
tracheal epithelial cell
1
ureteric bud
1
urothelial cell
Organ
4
epithelium
2
blood vessel
2
kidney
2
vasculature
Life stage
1
unknown
Date released
2
April, 2020
1
January, 2020
1
September, 2022
Software used
1
macs
1
r
Lab
2
AMP-T2D consortium
2
Xin Sun, UCSD
Project
2
AMP
2
LungMap
RFA
2
AMP
2
LungMap2
Showing 4 of 4 results
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Download
FileSet
DSR412AJP
released
Annotation file set
: Target gene predictions for BSS00310 epithelial cell of proximal tubule from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR294KMW
released
Annotation file set
: ATAC-seq peaks in capillary 1 from lung snATAC-seq
Lab:
Xin Sun, UCSD
Project:
LungMap
FileSet
DSR864HPI
released
Annotation file set
: ATAC-seq peaks in capillary 2 from lung snATAC-seq
Lab:
Xin Sun, UCSD
Project:
LungMap
FileSet
DSR184YBQ
released
Annotation file set
: Accessible chromatin annotation of kidney epithelial cell of proximal tubule from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP