Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
13
gene expression
7
accessible chromatin
4
histone modifications
4
target gene predictions
3
candidate regulatory elements
2
chromatin state
2
variant allelic effects
1
binding sites
Annotation Category
7
cis-regulatory elements
Annotation type Category
5
ATAC-seq
1
DNase-seq
1
snATAC-seq
Available data
7
bed bed3+
6
bigWig
File set status
7
released
Genome assembly (visualization)
7
hg19
6
GRCh38
Organism
7
Homo sapiens
Biosample type
7
primary cell
Biosample term
20
pigmented layer of retina
16
endothelial cell
8
EndoC_BH1
8
pancreatic beta cell
8
pancreatic ductal cell
8
retinal pigment epithelial cell
7
hepatocyte
7
pancreatic acinar cell
7
pancreatic alpha cell
6
endothelial cell of hepatic sinusoid
5
pancreatic delta cell
4
type II pneumocyte
3
colon epithelial cell
3
cortical cell of adrenal gland
3
endothelial cell of lymphatic vessel
3
enterocyte
3
type I pneumocyte
2
aortic endothelial cell
2
capillary endothelial cell
2
club cell
2
endocardial cell
2
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
keratinocyte
2
luminal epithelial cell of mammary gland
2
mammary gland epithelial cell
2
mesothelial cell
2
pancreatic polypeptide-secreting cell
1
basal cell of epidermis
1
breast epithelium
1
bronchial epithelial cell
1
cardiac endothelial cell
1
cholangiocyte
1
choroid plexus epithelial cell
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
dermis microvascular lymphatic vessel endothelial cell
1
eccrine cell
1
enterochromaffin-like cell
1
enterocyte of epithelium of small intestine
1
enteroendocrine cell
1
epithelial cell of prostate
1
esophagus squamous epithelium
1
foreskin keratinocyte
1
foveolar cell of stomach
1
gastric goblet cell
1
glomerular endothelial cell
1
glomerular epithelium
1
goblet cell
1
granular cell of epidermis
1
iris pigment epithelial cell
1
kidney distal convoluted tubule epithelial cell
1
kidney glomerular epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
kidney tubule cell
1
lung neuroendocrine cell
1
mammary epithelial cell
1
myoepithelial cell
1
neuroendocrine cell
1
non keratinizing barrier epithelial cell
1
non-pigmented ciliary epithelial cell
1
pancreatic A cell
1
pancreatic D cell
1
pancreatic PP cell
1
pancreatic endothelial cell
1
paneth cell
1
parietal cell
1
parietal epithelial cell
1
peptic cell
1
placental villus capillary endothelial cell
1
pulmonary artery endothelial cell
1
renal cortex tubule
1
renal cortical epithelial cell
1
renal intercalated cell
1
renal principal cell
1
respiratory goblet cell
1
small intestine goblet cell
1
stomach neuroendocrine cell
1
thyroid follicular cell
1
tracheal epithelial cell
1
type B pancreatic cell
1
type I cell of adrenal cortex
1
type II cell of adrenal cortex
1
ureteric bud
1
urothelial cell
Organ
7
epithelium
7
liver
Life stage
5
adult
Date released
5
February, 2024
January, 2020
1
June, 2020
1
November, 2021
Software used
7
macs
Lab
5
Ines Cebola, Imperial College London
1
AMP-T2D consortium
1
Bing Ren, UCSD
Project
6
AMP
1
ENCODE
RFA
5
AMP2
1
AMP
1
ENCODE3
month_released!
January, 2020
Showing 7 of 7 results
table-tab-icon
matrix-icon
Download
FileSet
DSR084ACR
released
Annotation file set
: Accessible chromatin annotation of Hepatocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR614AYG
released
Annotation file set
: Accessible chromatin of primary hepatocytes in basal media with 10nM insulin, 320µM palmitic acid and 320µM oleic acid (18 hours). Monolayer culture, day 3.
Lab:
Ines Cebola, Imperial College London
Project:
AMP
FileSet
DSR961YSK
released
Annotation file set
: Accessible chromatin of primary hepatocytes in basal media with 10nM insulin and 320µM oleic acid (18 hours). Monolayer culture, day 3.
Lab:
Ines Cebola, Imperial College London
Project:
AMP
FileSet
DSR909IMA
released
Annotation file set
: Accessible chromatin of primary hepatocytes in basal media with 10nM insulin and 320µM palmitic acid (18 hours). Monolayer culture, day 3.
Lab:
Ines Cebola, Imperial College London
Project:
AMP
FileSet
DSR862SUJ
released
Annotation file set
: Accessible chromatin of primary hepatocytes in basal media with 10nM insulin (18 hours). Monolayer culture, day 3.
Lab:
Ines Cebola, Imperial College London
Project:
AMP
FileSet
DSR683ANQ
released
Annotation file set
: Accessible chromatin of primary hepatocytes in basal media with 0.1nM insulin (18 hours). Monolayer culture, day 3.
Lab:
Ines Cebola, Imperial College London
Project:
AMP
FileSet
DSR956IPN
released
Annotation file set
: Accessible chromatin annotation for Liver Hepatocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP