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Schema
Citing CMDGA
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Annotation type
1
accessible chromatin
Annotation Category
1
cis-regulatory elements
Annotation type Category
1
snATAC-seq
Available data
1
bed bed3+
1
bigWig
File set status
1
released
Genome assembly (visualization)
1
GRCh38
1
hg19
Organism
1
Homo sapiens
Biosample type
1
primary cell
Biosample term
18
endothelial cell
6
colon epithelial cell
6
pancreatic acinar cell
6
pancreatic alpha cell
6
pancreatic beta cell
6
pancreatic delta cell
6
type II pneumocyte
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
Connecting Tubule Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Degenerative Connecting Tubule Cell
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
Medullary Thick Ascending Limb Cell
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Transitional Principal-Intercalated Cell
5
cortical cell of adrenal gland
5
pancreatic ductal cell
4
endothelial cell of lymphatic vessel
4
keratinocyte
4
luminal epithelial cell of mammary gland
4
type I pneumocyte
3
club cell
3
endocardial cell
3
enterocyte
3
mesothelial cell
2
EndoC_BH1
2
basal cell of epidermis
2
capillary endothelial cell
2
cardiac endothelial cell
2
eccrine cell
2
endothelial cell of hepatic sinusoid
2
enterochromaffin-like cell
2
enterocyte of epithelium of small intestine
2
foveolar cell of stomach
2
granular cell of epidermis
2
hepatocyte
2
mammary gland epithelial cell
2
myoepithelial cell
2
non keratinizing barrier epithelial cell
2
pancreatic A cell
2
pancreatic polypeptide-secreting cell
2
paneth cell
2
parietal cell
2
peptic cell
2
respiratory goblet cell
2
small intestine goblet cell
2
stomach neuroendocrine cell
2
thyroid follicular cell
2
type B pancreatic cell
2
type I cell of adrenal cortex
2
type II cell of adrenal cortex
1
cholangiocyte
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
enteroendocrine cell
1
gastric goblet cell
1
goblet cell
1
lung neuroendocrine cell
1
neuroendocrine cell
1
parietal epithelial cell
1
placental villus capillary endothelial cell
1
retinal pigment epithelial cell
1
ureteric bud
Organ
1
epithelium
1
eye
Date released
1
November, 2021
Software used
1
macs
Lab
1
Bing Ren, UCSD
Project
AMP
1
ENCODE
RFA
1
ENCODE3
biosample_term_name!
Degenerative Connecting Tubule Cell / Principal Cell
award.project!
AMP
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Download
FileSet
DSR760OPB
released
Annotation file set
: Accessible chromatin annotation of Fetal Retinal Pigment Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE