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Schema
Citing CMDGA
Clear Filters
Annotation type
4
accessible chromatin
Annotation Category
4
cis-regulatory elements
Annotation type Category
2
ATAC-seq
1
DNase-seq
1
snATAC-seq
Available data
15
bed bed3+
4
bigWig
1
bed bed9
File set status
4
released
Genome assembly (visualization)
4
hg19
2
GRCh38
Organism
4
Homo sapiens
Biosample type
2
in vitro differentiated cells
2
primary cell
Biosample term
14
endothelial cell
13
pigmented layer of retina
12
hepatocyte
9
pancreatic beta cell
8
pancreatic alpha cell
7
pancreatic acinar cell
7
pancreatic ductal cell
6
endothelial cell of hepatic sinusoid
6
pancreatic delta cell
4
retinal pigment epithelial cell
4
type II pneumocyte
3
colon epithelial cell
3
cortical cell of adrenal gland
3
endothelial cell of lymphatic vessel
3
enterocyte
3
pancreatic polypeptide-secreting cell
3
type I pneumocyte
2
aortic endothelial cell
2
capillary endothelial cell
2
club cell
2
endocardial cell
2
glomerular visceral epithelial cell
2
keratinocyte
2
luminal epithelial cell of mammary gland
2
mesothelial cell
1
EndoC_BH1
1
basal cell of epidermis
1
brain microvascular endothelial cell
1
cardiac endothelial cell
1
cholangiocyte
1
choroid plexus epithelial cell
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
eccrine cell
1
endothelial cell of umbilical vein
1
enterochromaffin-like cell
1
enterocyte of epithelium of small intestine
1
enteroendocrine cell
1
epithelial cell of proximal tubule
1
foveolar cell of stomach
1
gastric goblet cell
1
glomerular endothelial cell
1
goblet cell
1
granular cell of epidermis
1
kidney capillary endothelial cell
1
kidney distal convoluted tubule epithelial cell
1
kidney epithelial cell
1
kidney glomerular epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
kidney tubule cell
1
lung neuroendocrine cell
1
mammary gland epithelial cell
1
myoepithelial cell
1
neuroendocrine cell
1
non keratinizing barrier epithelial cell
1
pancreatic A cell
1
pancreatic D cell
1
pancreatic PP cell
1
pancreatic endothelial cell
1
paneth cell
1
parietal cell
1
parietal epithelial cell
1
peptic cell
1
placental villus capillary endothelial cell
1
renal cortical epithelial cell
1
renal intercalated cell
1
renal principal cell
1
respiratory goblet cell
1
small intestine goblet cell
1
stomach neuroendocrine cell
1
thyroid follicular cell
1
type B pancreatic cell
1
type I cell of adrenal cortex
1
type II cell of adrenal cortex
1
ureteric bud
Organ
4
epithelium
4
eye
Date released
2
November, 2022
1
January, 2020
1
November, 2021
Software used
4
macs
Lab
3
AMP-T2D consortium
1
Bing Ren, UCSD
Project
3
AMP
1
ENCODE
RFA
3
AMP
1
ENCODE3
biosample_term_name!
kidney inner medulla collecting duct principal cell
Showing 4 of 4 results
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Download
FileSet
DSR246ESC
released
Annotation file set
: Accessible chromation annotation of ATAC-seq of retinal pigment epithelial cell using nonviral (EP1) with cigarette smoke extract (CSE) treatment
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR287DMU
released
Annotation file set
: Accessible chromation annotation of ATAC-seq of retinal pigment epithelial cell using viral (IMR90.4) with cigarette smoke extract (CSE) treatment
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR760OPB
released
Annotation file set
: Accessible chromatin annotation of Fetal Retinal Pigment Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR296CDQ
released
Annotation file set
: Accessible chromatin annotation of retinal pigment epithelial cell from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP