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Schema
Citing CMDGA
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Annotation type
11
accessible chromatin
8
gene expression
4
variant allelic effects
3
differential activity
1
target gene predictions
Annotation Category
4
Genetic variant effects
Annotation type Category
3
snATAC-seq
1
ATAC-seq
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
3
primary cell
1
cell line
Biosample term
3
enterocyte
2
endothelial cell
2
epithelial cell of esophagus
2
goblet cell
2
hepatocyte
1
brain microvascular endothelial cell
1
retinal pigment epithelial cell
1
EndoC_BH1
1
Liver fetal (hepatocyte)
1
bronchial goblet cell
1
choroid plexus epithelial cell
1
cortical cell of adrenal gland
1
endothelial cell of umbilical vein
1
epithelial cell of proximal tubule
1
glomerular endothelial cell
1
glomerular visceral epithelial cell
1
granulosa cell
1
keratinocyte
1
kidney capillary endothelial cell
1
kidney epithelial cell
1
kidney glomerular epithelial cell
1
luminal epithelial cell of prostatic duct
1
mammary gland epithelial cell
1
mesothelial cell
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
pancreatic delta cell
1
pancreatic ductal cell
1
pancreatic polypeptide-secreting cell
1
parietal cell
1
peptic cell
1
renal cortical epithelial cell
1
thyroid follicular cell
1
type II pneumocyte
Organ
4
epithelium
3
intestine
1
pancreas
Date released
3
February, 2024
1
May, 2020
Software used
4
deltasvm
Lab
3
Bing Ren, UCSD
1
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
organ_slims!
limb
Showing 4 of 4 results
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Download
FileSet
DSR972LVJ
released
Annotation file set
: Variant allelic effects annotation of Enterocytes (sub-type3) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR623GGP
released
Annotation file set
: Variant allelic effects annotation of Enterocytes (sub-type2) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR654PGN
released
Annotation file set
: Variant allelic effects annotation of Enterocytes from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR871UFR
released
Annotation file set
: Genetic variants with deltaSVM predictions in EndoB-CH1 beta cell ATAC-seq
Lab:
AMP-T2D consortium
Project:
AMP