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Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
1
target gene predictions
1
variant allelic effects
Annotation Category
2
cis-regulatory elements
1
Genetic variant effects
1
Target gene links
Annotation type Category
ChIP-seq
7
DNase-seq
2
snATAC-seq
1
ATAC-seq
Available data
4
bed bed3+
1
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
2
GRCh38
Organism
4
Homo sapiens
Biosample type
3
primary cell
1
in vitro differentiated cells
Biosample term
38
endothelial cell
25
hepatocyte
21
EndoC_BH1
21
pancreatic ductal cell
20
pigmented layer of retina
18
epithelial cell of proximal tubule
18
pancreatic beta cell
17
glomerular endothelial cell
17
pancreatic acinar cell
17
pancreatic alpha cell
16
pancreatic delta cell
10
endothelial cell of hepatic sinusoid
9
glomerular visceral epithelial cell
9
retinal pigment epithelial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
type II pneumocyte
6
colon epithelial cell
6
cortical cell of adrenal gland
6
enterocyte
6
keratinocyte
6
pancreatic polypeptide-secreting cell
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
Connecting Tubule Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
Medullary Thick Ascending Limb Cell
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Transitional Principal-Intercalated Cell
5
endothelial cell of umbilical vein
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
pancreatic endothelial cell
4
endothelial cell of lymphatic vessel
4
kidney connecting tubule epithelial cell
4
kidney glomerular epithelial cell
4
luminal epithelial cell of mammary gland
4
mammary gland epithelial cell
4
mesothelial cell
4
pancreatic A cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
renal cortical epithelial cell
4
type B pancreatic cell
4
type I pneumocyte
3
S-shaped body
3
choroid plexus epithelial cell
3
club cell
3
endocardial cell
3
goblet cell
3
hepatocyte(AFP)
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney epithelial cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney tubule cell
3
parietal cell
3
peptic cell
3
thyroid follicular cell
2
aortic endothelial cell
2
basal cell of epidermis
2
breast epithelium
2
capillary endothelial cell
2
cardiac endothelial cell
2
cholangiocyte
2
eccrine cell
2
enterochromaffin-like cell
2
enterocyte of epithelium of small intestine
2
epithelial cell of esophagus
2
epithelial cell of prostate
2
foveolar cell of stomach
2
granular cell of epidermis
2
kidney capillary endothelial cell
2
kidney inner medulla collecting duct intercalated cell
2
mammary epithelial cell
2
myoepithelial cell
2
non keratinizing barrier epithelial cell
2
paneth cell
2
renal principal cell
2
renal vesicle
2
respiratory goblet cell
2
small intestine goblet cell
2
stomach neuroendocrine cell
2
type I cell of adrenal cortex
2
type II cell of adrenal cortex
2
ureteric bud
2
vagina
1
brain microvascular endothelial cell
1
retinal pigment epithelial cell
1
Liver fetal (hepatocyte)
1
brain microvascular endothelial cell
1
breast - mammary tissue
1
bronchial epithelial cell
1
bronchial goblet cell
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
dermis microvascular lymphatic vessel endothelial cell
1
endothelial cell of coronary artery
1
enteroendocrine cell
1
epithelial cell of distal tubule
1
esophagus - mucosa
1
esophagus squamous epithelium
1
foreskin keratinocyte
1
gastric goblet cell
1
glomerular epithelium
1
granulosa cell
1
intermediate endothelial cell
1
iris pigment epithelial cell
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
luminal epithelial cell of prostatic duct
1
lung neuroendocrine cell
1
meso-epithelial cell
1
nephron tubule
1
neuroendocrine cell
1
non-pigmented ciliary epithelial cell
1
pancreatic D cell
1
pancreatic PP cell
1
parietal epithelial cell
1
placental villus capillary endothelial cell
1
proximal tubule
1
pulmonary artery endothelial cell
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal connecting tubule
1
renal cortex tubule
1
renal glomerulus
1
renal intercalated cell
1
tracheal epithelial cell
1
urothelial cell
Organ
4
epithelium
4
mammary gland
0
vagina
Date released
2
November, 2021
1
February, 2024
1
June, 2020
Software used
2
macs
1
abc
1
deltasvm
Lab
3
Bing Ren, UCSD
1
AMP-T2D consortium
Project
2
AMP
2
ENCODE
RFA
2
AMP
2
ENCODE3
annotation_type_category!
ChIP-seq
Showing 4 of 4 results
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Download
FileSet
DSR990AWB
released
Annotation file set
: Target gene predictions of Mammary Epithelial from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR492XEZ
released
Annotation file set
: Accessible chromatin annotation of Mammary Epithelial from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR732VXG
released
Annotation file set
: Variant allelic effects annotation of Mammary epithelial cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR534MWT
released
Annotation file set
: Accessible chromatin annotation for Breast Breast cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP