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Citing CMDGA
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Annotation type
2
variant allelic effects
1
chromatin state
Annotation Category
2
Genetic variant effects
1
cis-regulatory elements
Annotation type Category
4
ChIP-seq
DNase-seq
2
snATAC-seq
Available data
2
bed bed3+
1
bed bed9
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
4
esophagus
4
smooth muscle cell of the esophagus
3
epithelial cell of esophagus
3
esophagus muscularis mucosa
2
esophagus squamous epithelium
1
esophagus - mucosa
1
esophagus - muscularis
1
esophagus mucosa
Organ
3
epithelium
3
esophagus
Life stage
1
unknown
Date released
2
February, 2024
1
September, 2022
Software used
2
deltasvm
1
chromhmm
Lab
2
Bing Ren, UCSD
1
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
annotation_type_category!
DNase-seq
Showing 3 of 3 results
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Download
FileSet
DSR929IPZ
released
Annotation file set
: Chromatin states for BSS00307 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR545JGJ
released
Annotation file set
: Variant allelic effects annotation of Esophageal epithelial cells (sub-type2) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR761QWI
released
Annotation file set
: Variant allelic effects annotation of Esophageal epithelial cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP