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Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
target gene predictions
1
accessible chromatin
1
binding sites
1
chromatin state
1
histone modifications
Annotation Category
6
cis-regulatory elements
2
Target gene links
Annotation type Category
6
ChIP-seq
5
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
7
bed bed3+
1
bed bed9
File set status
8
released
Genome assembly (visualization)
8
hg19
1
GRCh38
Organism
8
Homo sapiens
Biosample type
8
cell line
Biosample term
11
breast epithelium
11
esophagus muscularis mucosa
11
esophagus squamous epithelium
10
esophagus
8
GM12864
8
GM12865
8
MM.1S
6
GM10248
6
GM10266
6
epithelial cell of esophagus
4
DND-41
4
KOPT-K1
4
Loucy
4
smooth muscle cell of the esophagus
3
GM13976
3
GM13977
3
GM20000
2
GM12866
1
GM08714
1
GM12801
1
SU-DHL-2
1
breast
1
breast - mammary tissue
1
esophagus - mucosa
1
esophagus - muscularis
1
esophagus mucosa
Organ
8
lymph node
0
breast
0
esophagus
Life stage
4
adult
Date released
3
February, 2021
3
September, 2022
1
June, 2020
1
May, 2021
Software used
3
macs
2
r
1
abc
1
chromhmm
1
encode-ccres
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
Showing 8 of 8 results
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Download
FileSet
DSR677EVG
released
Annotation file set
: Candidate regulatory elements for BSS01274 MM.1S from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR127KNA
released
Annotation file set
: Target gene predictions for BSS01274 MM.1S from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR966TYL
released
Annotation file set
: Chromatin states for BSS01274 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR002PIZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE MM.1S
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR427VFP
released
Annotation file set
: Histone modifications annotation for Blood MMPERIOD1S from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR861GVO
released
Annotation file set
: Binding sites annotation for Blood MMPERIOD1S from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR064TPU
released
Annotation file set
: enhancer-gene predicton of MM.1S-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR718HIX
released
Annotation file set
: Accessible chromatin annotation for Blood MM.1S from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP