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Schema
Citing CMDGA
Clear Filters
Annotation type
13
gene expression
8
accessible chromatin
4
histone modifications
4
target gene predictions
3
candidate regulatory elements
2
chromatin state
2
variant allelic effects
1
binding sites
Annotation Category
8
cis-regulatory elements
Annotation type Category
5
ATAC-seq
2
DNase-seq
1
snATAC-seq
Available data
8
bed bed3+
7
bigWig
File set status
8
released
Genome assembly (visualization)
8
hg19
7
GRCh38
Organism
8
Homo sapiens
Biosample type
8
primary cell
Biosample term
8
hepatocyte
6
endothelial cell of hepatic sinusoid
4
liver
3
hepatic stellate cell
2
HepG2
1
HuH-7
1
chorion membrane
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
fibroblast of villous mesenchyme
1
placenta
1
placental hematopoietic stem cell
1
placental villus capillary endothelial cell
1
trophoblast cell
1
trophoblast giant cell
1
umbilical cord
Organ
8
epithelium
8
liver
0
extraembryonic component
Life stage
5
adult
Date released
5
February, 2024
1
January, 2020
1
June, 2020
1
November, 2021
Software used
8
macs
Lab
5
Ines Cebola, Imperial College London
2
AMP-T2D consortium
1
Bing Ren, UCSD
Project
7
AMP
1
ENCODE
RFA
5
AMP2
2
AMP
1
ENCODE3
Showing 8 of 8 results
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FileSet
DSR084ACR
released
Annotation file set
: Accessible chromatin annotation of Hepatocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR614AYG
released
Annotation file set
: Accessible chromatin of primary hepatocytes in basal media with 10nM insulin, 320µM palmitic acid and 320µM oleic acid (18 hours). Monolayer culture, day 3.
Lab:
Ines Cebola, Imperial College London
Project:
AMP
FileSet
DSR961YSK
released
Annotation file set
: Accessible chromatin of primary hepatocytes in basal media with 10nM insulin and 320µM oleic acid (18 hours). Monolayer culture, day 3.
Lab:
Ines Cebola, Imperial College London
Project:
AMP
FileSet
DSR909IMA
released
Annotation file set
: Accessible chromatin of primary hepatocytes in basal media with 10nM insulin and 320µM palmitic acid (18 hours). Monolayer culture, day 3.
Lab:
Ines Cebola, Imperial College London
Project:
AMP
FileSet
DSR862SUJ
released
Annotation file set
: Accessible chromatin of primary hepatocytes in basal media with 10nM insulin (18 hours). Monolayer culture, day 3.
Lab:
Ines Cebola, Imperial College London
Project:
AMP
FileSet
DSR683ANQ
released
Annotation file set
: Accessible chromatin of primary hepatocytes in basal media with 0.1nM insulin (18 hours). Monolayer culture, day 3.
Lab:
Ines Cebola, Imperial College London
Project:
AMP
FileSet
DSR956IPN
released
Annotation file set
: Accessible chromatin annotation for Liver Hepatocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR934SGC
released
Annotation file set
: Accessible chromatin annotation of liver hepatocyte from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP