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Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
2
candidate regulatory elements
1
accessible chromatin
1
chromatin state
1
eQTL
Annotation Category
4
cis-regulatory elements
3
Target gene links
1
Genetic variant effects
Annotation type Category
5
DNase-seq
4
ChIP-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
RNA-seq
1
pCHi-C
Available data
6
bed bed3+
1
bed bed9
File set status
8
released
Genome assembly (visualization)
7
hg19
2
GRCh38
Organism
8
Homo sapiens
Biosample type
8
tissue
Biosample term
9
testis
8
ovary
2
luteal cell
1
Leydig cell
1
somatic gonadal cell
Organ
8
gonad
8
ovary
Life stage
adult
4
embryonic
Date released
3
September, 2022
1
February, 2021
1
January, 2022
1
June, 2020
1
March, 2020
1
May, 2021
Software used
2
r
1
abc
1
chromhmm
1
encode-ccres
1
macs
1
nospecificsoft_customcode
1
qTLtools
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
biosample_type!
cell line
relevant_life_stage!
adult
Showing 8 of 8 results
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Download
FileSet
DSR159GUO
released
Annotation file set
: Candidate regulatory elements for BSS01403 ovary from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR249ZSK
released
Annotation file set
: Target gene predictions for BSS01403 ovary from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR341FQS
released
Annotation file set
: Chromatin states for BSS01403 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR119ATQ
released
Annotation file set
: ovary eQTL of studay GTEx from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR391OBX
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE ovary
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR547QBE
released
Annotation file set
: enhancer-gene predicton of ovary-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR007KDG
released
Annotation file set
: Accessible chromatin annotation for Gonad Ovary from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR751JBO
released
Annotation file set
: A target gene prediction annotation in Human Ovary of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP