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Schema
Citing CMDGA
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Annotation type
1
accessible chromatin
1
variant allelic effects
Annotation Category
1
Genetic variant effects
1
cis-regulatory elements
Annotation type Category
12
ChIP-seq
7
DNase-seq
2
snATAC-seq
1
ATAC-seq
Available data
2
bed bed3+
1
bigWig
File set status
2
released
Genome assembly (visualization)
2
hg19
1
GRCh38
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
19
endothelial cell
10
pancreatic alpha cell
10
pancreatic beta cell
9
pancreatic delta cell
7
pancreatic acinar cell
6
enterocyte
6
pancreatic ductal cell
5
type II pneumocyte
4
cortical cell of adrenal gland
4
pancreatic polypeptide-secreting cell
3
colon epithelial cell
3
endothelial cell of lymphatic vessel
3
goblet cell
3
keratinocyte
3
mesothelial cell
3
type I pneumocyte
2
capillary endothelial cell
2
club cell
2
endocardial cell
2
endothelial cell of hepatic sinusoid
2
epithelial cell of esophagus
2
hepatocyte
2
luminal epithelial cell of mammary gland
2
mammary gland epithelial cell
2
parietal cell
2
peptic cell
2
thyroid follicular cell
1
basal cell of epidermis
1
bronchial goblet cell
1
cardiac endothelial cell
1
cholangiocyte
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
eccrine cell
1
enterochromaffin-like cell
1
enterocyte of epithelium of small intestine
1
enteroendocrine cell
1
foveolar cell of stomach
1
gastric goblet cell
1
granular cell of epidermis
1
granulosa cell
1
kidney distal convoluted tubule epithelial cell
1
luminal epithelial cell of prostatic duct
1
lung neuroendocrine cell
1
luteal cell
1
myoepithelial cell
1
neuroendocrine cell
1
non keratinizing barrier epithelial cell
1
pancreatic endothelial cell
1
paneth cell
1
parietal epithelial cell
1
placental villus capillary endothelial cell
1
respiratory goblet cell
1
retinal pigment epithelial cell
1
small intestine goblet cell
1
stomach neuroendocrine cell
1
type I cell of adrenal cortex
1
type II cell of adrenal cortex
1
ureteric bud
Organ
2
epithelium
2
mammary gland
0
gonad
Date released
1
February, 2024
1
November, 2021
Software used
1
deltasvm
1
macs
Lab
2
Bing Ren, UCSD
Project
1
AMP
1
ENCODE
RFA
1
AMP
1
ENCODE3
Showing 2 of 2 results
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Download
FileSet
DSR492XEZ
released
Annotation file set
: Accessible chromatin annotation of Mammary Epithelial from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR732VXG
released
Annotation file set
: Variant allelic effects annotation of Mammary epithelial cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP