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Citing CMDGA
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Annotation type
2
gene expression
1
accessible chromatin
1
binding sites
1
caQTL
histone modifications
1
target gene predictions
Annotation Category
1
Target gene links
1
cis-regulatory elements
Annotation type Category
2
ATAC-seq
1
DNase-seq
1
H3K27ac ChIP-Seq
Available data
2
bed bed3+
1
bigWig
File set status
2
released
Genome assembly (visualization)
2
hg19
1
GRCh38
Organism
2
Homo sapiens
Biosample type
1
cell line
1
primary cell
Biosample term
25
heart
10
heart left ventricle
8
fibroblast of cardiac tissue
6
coronary artery
6
heart right ventricle
5
right atrium auricular region
3
endocardial cell
2
cardiac endothelial cell
2
left cardiac atrium
2
right cardiac atrium
2
smooth muscle cell of the coronary artery
2
ventricular cardiac muscle cell
1
cardiac ventricle
1
fetal heart
Organ
2
artery
2
blood vessel
2
heart
2
vasculature
Life stage
1
unknown
Date released
1
February, 2021
1
May, 2021
Software used
1
abc
1
macs
Lab
1
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
2
AMP
RFA
2
AMP
annotation_type!
histone modifications
Showing 2 of 2 results
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FileSet
DSR442EVO
released
Annotation file set
: Accessible chromatin of smooth muscle cell of the coronary artery from GSE113348 ATAC-seq cell lines
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR886XYE
released
Annotation file set
: enhancer-gene predicton of coronary_artery_smooth_muscle_cell-Miller2016 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP