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Schema
Citing CMDGA
Clear Filters
Annotation type
candidate regulatory elements
2
target gene predictions
1
accessible chromatin
1
binding sites
1
chromatin state
1
histone modifications
Annotation Category
4
cis-regulatory elements
2
Target gene links
Annotation type Category
4
ChIP-seq
3
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
5
bed bed3+
1
bed bed9
File set status
6
released
Genome assembly (visualization)
6
hg19
1
GRCh38
Organism
6
Homo sapiens
Biosample type
6
cell line
Biosample term
34
small intestine
29
large intestine
13
sigmoid colon
11
transverse colon
8
colon epithelial cell
7
Peyer's patch
6
HT-29
6
colonic mucosa
6
enterocyte
5
SW480
5
duodenal mucosa
5
mucosa of rectum
4
HCT-116 cell
4
HCT116
4
enteric smooth muscle cell
4
muscle layer of colon
4
muscle layer of duodenum
3
RKO
3
rectum smooth muscle tissue
2
enterocyte of epithelium of small intestine
2
paneth cell
2
small intestine goblet cell
1
Crypt of Lieberkuhn
1
colon
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
crypt of Lieberkuhn
1
intestinal epithelial cell
1
intestinal epithelium
1
small intestine - terminal Ileum
Disease term
2
colorectal adenocarcinoma
Organ
6
intestine
6
large intestine
Life stage
2
adult
Date released
2
February, 2021
2
September, 2022
1
June, 2020
1
May, 2021
Software used
3
macs
1
abc
1
chromhmm
1
r
Lab
5
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
6
AMP
RFA
6
AMP
annotation_type!
candidate regulatory elements
Showing 6 of 6 results
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Download
FileSet
DSR883VDG
released
Annotation file set
: Target gene predictions for BSS00708 HT-29 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR895ABN
released
Annotation file set
: Chromatin states for BSS00708 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR582VBD
released
Annotation file set
: Histone modifications annotation for Digestive tract HT-29 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR168GZG
released
Annotation file set
: Binding sites annotation for Digestive tract HT-29 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR797VJC
released
Annotation file set
: enhancer-gene predicton of HT29 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR208YEV
released
Annotation file set
: Accessible chromatin annotation for Digestive tract HT-29 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP