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Schema
Citing CMDGA
Clear Filters
Annotation type
1
binding sites
1
chromatin state
1
histone modifications
Annotation Category
3
cis-regulatory elements
Annotation type Category
4
ChIP-seq
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
2
bed bed3+
1
bed bed9
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
3
cell line
Biosample term
17
small intestine
14
large intestine
7
colon epithelial cell
6
enterocyte
6
sigmoid colon
5
transverse colon
4
colonic mucosa
4
enteric smooth muscle cell
3
HCT116
3
HT-29
3
Peyer's patch
3
SW480
3
duodenal mucosa
3
mucosa of rectum
2
HCT-116 cell
2
RKO
2
enterocyte of epithelium of small intestine
2
muscle layer of colon
2
muscle layer of duodenum
2
paneth cell
2
rectum smooth muscle tissue
2
small intestine goblet cell
1
Crypt of Lieberkuhn
1
colon
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
intestinal epithelial cell
1
intestinal epithelium
1
small intestine - terminal Ileum
Disease term
1
colorectal adenocarcinoma
Organ
3
intestine
3
large intestine
Life stage
1
adult
Date released
2
February, 2021
1
September, 2022
Software used
2
macs
1
chromhmm
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
annotation_type!
candidate regulatory elements
annotation_type_category!
DNase-seq
Showing 3 of 3 results
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Download
FileSet
DSR895ABN
released
Annotation file set
: Chromatin states for BSS00708 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR582VBD
released
Annotation file set
: Histone modifications annotation for Digestive tract HT-29 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR168GZG
released
Annotation file set
: Binding sites annotation for Digestive tract HT-29 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP