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Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
2
target gene predictions
Annotation Category
2
Target gene links
2
cis-regulatory elements
Annotation type Category
2
ATAC-seq
2
snATAC-seq
Available data
4
bed bed3+
2
bigWig
File set status
4
released
Genome assembly (visualization)
4
GRCh38
4
hg19
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
48
small intestine
43
large intestine
18
sigmoid colon
15
transverse colon
11
Peyer's patch
8
colon epithelial cell
7
HT-29
7
colonic mucosa
6
SW480
6
duodenal mucosa
6
enterocyte
6
mucosa of rectum
6
muscle layer of colon
6
muscle layer of duodenum
5
HCT116
4
HCT-116 cell
4
RKO
4
enteric smooth muscle cell
2
enterocyte of epithelium of small intestine
2
paneth cell
2
rectum smooth muscle tissue
2
small intestine goblet cell
1
Caco-2
1
Crypt of Lieberkuhn
1
LoVo
1
colon
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
crypt of Lieberkuhn
1
intestinal epithelial cell
1
intestinal epithelium
1
rectal smooth muscle tissue
1
small intestine - terminal Ileum
Organ
4
intestine
Date released
4
November, 2021
Software used
2
abc
2
macs
Lab
4
Bing Ren, UCSD
Project
4
ENCODE
RFA
4
ENCODE3
annotation_type!
chromatin state
Showing 4 of 4 results
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Download
FileSet
DSR814KVL
released
Annotation file set
: Target gene predictions of Smooth Muscle (Colon) 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR483TPA
released
Annotation file set
: Target gene predictions of Smooth Muscle (Colon) 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR300AWQ
released
Annotation file set
: Accessible chromatin annotation of Smooth Muscle (Colon) 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR441RLT
released
Annotation file set
: Accessible chromatin annotation of Smooth Muscle (Colon) 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE