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Schema
Citing CMDGA
Clear Filters
Annotation type
accessible chromatin
1
binding sites
1
candidate regulatory elements
1
histone modifications
Annotation Category
3
cis-regulatory elements
Annotation type Category
3
ChIP-seq
1
DNase-seq
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
3
cell line
Biosample term
62
small intestine
55
large intestine
22
sigmoid colon
18
transverse colon
13
Peyer's patch
10
colonic mucosa
9
duodenal mucosa
9
mucosa of rectum
8
muscle layer of colon
8
muscle layer of duodenum
7
HT-29
6
HCT116
6
SW480
6
colon epithelial cell
4
rectum smooth muscle tissue
3
HCT-116 cell
3
RKO
3
enterocyte
2
enteric smooth muscle cell
1
Caco-2
1
Crypt of Lieberkuhn
1
LoVo
1
colon
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
enterocyte of epithelium of small intestine
1
intestinal epithelial cell
1
intestinal epithelium
1
paneth cell
1
rectal smooth muscle tissue
1
small intestine - terminal Ileum
1
small intestine goblet cell
Organ
3
intestine
3
large intestine
Life stage
1
unknown
Date released
3
February, 2021
Software used
2
macs
1
encode-ccres
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
annotation_type!
accessible chromatin
Showing 3 of 3 results
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Download
FileSet
DSR837ODF
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE RKO
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR823SVP
released
Annotation file set
: Histone modifications annotation for Digestive tract RKO from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR612HZP
released
Annotation file set
: Binding sites annotation for Digestive tract RKO from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP