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Citing CMDGA
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Annotation type
2
candidate regulatory elements
1
accessible chromatin
1
binding sites
1
chromatin state
1
histone modifications
1
target gene predictions
Annotation Category
3
cis-regulatory elements
Annotation type Category
3
ChIP-seq
2
DNase-seq
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
3
cell line
Biosample term
29
small intestine
27
large intestine
10
sigmoid colon
8
transverse colon
7
Peyer's patch
4
colonic mucosa
4
duodenal mucosa
4
mucosa of rectum
4
muscle layer of colon
4
muscle layer of duodenum
3
HT-29
3
SW480
2
HCT-116 cell
2
HCT116
2
RKO
1
Caco-2
1
LoVo
1
colon
1
colon epithelial cell
1
rectal smooth muscle tissue
1
rectum smooth muscle tissue
Disease term
1
colorectal adenocarcinoma
Organ
3
intestine
3
large intestine
Life stage
2
adult
Date released
2
February, 2021
1
September, 2022
Software used
1
encode-ccres
1
macs
1
r
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
Showing 3 of 3 results
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Download
FileSet
DSR211KZE
released
Annotation file set
: Candidate regulatory elements for BSS01682 SW480 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR047FTW
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE SW480
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR783QVF
released
Annotation file set
: Binding sites annotation for Digestive tract SW_480 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP