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Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
2
target gene predictions
1
candidate regulatory elements
Annotation Category
3
cis-regulatory elements
2
Target gene links
Annotation type Category
2
ATAC-seq
2
snATAC-seq
1
ChIP-seq
1
DNase-seq
Available data
5
bed bed3+
2
bigWig
File set status
5
released
Genome assembly (visualization)
5
hg19
4
GRCh38
Organism
5
Homo sapiens
Biosample type
4
primary cell
1
cell line
Biosample term
63
small intestine
56
large intestine
23
sigmoid colon
19
transverse colon
14
Peyer's patch
10
colonic mucosa
9
colon epithelial cell
9
duodenal mucosa
9
mucosa of rectum
8
HT-29
8
muscle layer of colon
8
muscle layer of duodenum
7
SW480
6
HCT116
6
enterocyte
4
HCT-116 cell
4
RKO
4
enteric smooth muscle cell
4
rectum smooth muscle tissue
2
enterocyte of epithelium of small intestine
2
paneth cell
2
small intestine goblet cell
1
Caco-2
1
Crypt of Lieberkuhn
1
LoVo
1
colon
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
crypt of Lieberkuhn
1
intestinal epithelial cell
1
intestinal epithelium
1
rectal smooth muscle tissue
1
small intestine - terminal Ileum
Organ
5
intestine
4
epithelium
4
small intestine
1
large intestine
Life stage
1
adult
Date released
4
November, 2021
1
February, 2021
Software used
2
abc
2
macs
1
encode-ccres
Lab
4
Bing Ren, UCSD
1
AMP-T2D consortium
Project
4
ENCODE
1
AMP
RFA
4
ENCODE3
1
AMP
Showing 5 of 5 results
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Download
FileSet
DSR392SPL
released
Annotation file set
: Target gene predictions of Small Intestinal Goblet Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR802OCO
released
Annotation file set
: Target gene predictions of Small Intestinal Enterocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR459YTN
released
Annotation file set
: Accessible chromatin annotation of Small Intestinal Goblet Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR273VIV
released
Annotation file set
: Accessible chromatin annotation of Small Intestinal Enterocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR731FHY
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE Caco-2
Lab:
AMP-T2D consortium
Project:
AMP