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Citing CMDGA
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Annotation type
1
accessible chromatin
Annotation Category
Target gene links
1
cis-regulatory elements
Annotation type Category
1
snATAC-seq
Available data
1
bed bed3+
1
bigWig
File set status
1
released
Genome assembly (visualization)
1
GRCh38
1
hg19
Organism
1
Homo sapiens
Biosample type
1
primary cell
Biosample term
46
small intestine
42
large intestine
16
sigmoid colon
14
transverse colon
11
Peyer's patch
8
colonic mucosa
7
duodenal mucosa
7
mucosa of rectum
6
HT-29
6
SW480
6
enterocyte
6
muscle layer of colon
6
muscle layer of duodenum
5
colon epithelial cell
4
RKO
3
HCT-116 cell
3
HCT116
3
rectum smooth muscle tissue
2
enteric smooth muscle cell
1
Caco-2
1
Crypt of Lieberkuhn
1
LoVo
1
colon
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
crypt of Lieberkuhn
1
enterocyte of epithelium of small intestine
1
intestinal epithelial cell
1
intestinal epithelium
1
paneth cell
1
rectal smooth muscle tissue
1
small intestine - terminal Ileum
1
small intestine goblet cell
Organ
1
epithelium
1
intestine
Date released
1
November, 2021
Software used
1
macs
Lab
1
Bing Ren, UCSD
Project
1
ENCODE
RFA
1
ENCODE3
annotation_category!
Target gene links
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Download
FileSet
DSR173UGN
released
Annotation file set
: Accessible chromatin annotation of Paneth Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE