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Schema
Citing CMDGA
Clear Filters
Annotation type
target gene predictions
2
candidate regulatory elements
1
chromatin state
Annotation Category
3
cis-regulatory elements
Annotation type Category
3
ChIP-seq
2
DNase-seq
Available data
2
bed bed3+
1
bed bed9
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
3
cell line
Biosample term
6
HT-29
6
SW480
6
enterocyte
5
colon epithelial cell
4
RKO
3
HCT-116 cell
3
HCT116
2
enteric smooth muscle cell
1
Caco-2
1
LoVo
1
enterocyte of epithelium of small intestine
1
intestinal epithelial cell
1
paneth cell
1
small intestine goblet cell
Disease term
2
colorectal adenocarcinoma
Organ
3
intestine
3
large intestine
Life stage
3
adult
Date released
2
September, 2022
1
February, 2021
Software used
1
chromhmm
1
encode-ccres
1
r
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
biosample_type!
tissue
annotation_type!
target gene predictions
Showing 3 of 3 results
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Download
FileSet
DSR756UQP
released
Annotation file set
: Candidate regulatory elements for BSS00492 HCT116 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR815ZTC
released
Annotation file set
: Chromatin states for BSS00492 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR730OKU
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE HCT116
Lab:
AMP-T2D consortium
Project:
AMP