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Schema
Citing CMDGA
Clear Filters
Annotation type
5
candidate regulatory elements
2
target gene predictions
1
accessible chromatin
Annotation Category
6
cis-regulatory elements
2
Target gene links
Annotation type Category
7
DNase-seq
5
ChIP-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
8
bed bed3+
File set status
8
released
Genome assembly (visualization)
8
hg19
Organism
8
Homo sapiens
Biosample type
8
tissue
Biosample term
18
large intestine
18
small intestine
8
sigmoid colon
7
transverse colon
6
colon epithelial cell
6
enterocyte
5
HT-29
5
Peyer's patch
4
HCT-116 cell
4
RKO
4
SW480
4
colonic mucosa
4
enteric smooth muscle cell
3
HCT116
3
duodenal mucosa
3
mucosa of rectum
2
enterocyte of epithelium of small intestine
2
muscle layer of colon
2
muscle layer of duodenum
2
paneth cell
2
small intestine goblet cell
1
Caco-2
1
Crypt of Lieberkuhn
1
LoVo
1
colon
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
crypt of Lieberkuhn
1
intestinal epithelial cell
1
intestinal epithelium
1
rectal smooth muscle tissue
1
rectum smooth muscle tissue
1
small intestine - terminal Ileum
Organ
8
intestine
8
large intestine
Life stage
4
adult
1
young adult
Date released
September, 2022
5
February, 2021
1
June, 2020
1
March, 2020
1
May, 2021
Software used
5
encode-ccres
1
abc
1
macs
1
nospecificsoft_customcode
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
month_released!
September, 2022
Showing 8 of 8 results
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Download
FileSet
DSR867DET
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE sigmoid colon
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR541SVN
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE sigmoid colon
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR429OJV
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE sigmoid colon
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR850SQU
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE sigmoid colon
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR944WVE
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE sigmoid colon
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR284ZHE
released
Annotation file set
: enhancer-gene predicton of sigmoid_colon-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR968PSH
released
Annotation file set
: Accessible chromatin annotation for Digestive tract Colon, Sigmoid from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR074OIQ
released
Annotation file set
: A target gene prediction annotation in Human Sigmoid Colon of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP