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Schema
Citing CMDGA
Clear Filters
Annotation type
2
chromatin state
2
target gene predictions
1
accessible chromatin
1
candidate regulatory elements
Annotation Category
4
cis-regulatory elements
2
Target gene links
Annotation type Category
4
ChIP-seq
2
DNase-seq
1
ATAC-seq
1
snATAC-seq
Available data
5
bed bed3+
1
bed bed9
1
bigWig
File set status
6
released
Genome assembly (visualization)
6
hg19
3
GRCh38
Organism
6
Homo sapiens
Biosample type
4
tissue
2
primary cell
Biosample term
63
small intestine
56
large intestine
23
sigmoid colon
19
transverse colon
14
Peyer's patch
10
colonic mucosa
9
colon epithelial cell
9
duodenal mucosa
9
mucosa of rectum
8
HT-29
8
muscle layer of colon
8
muscle layer of duodenum
7
SW480
6
HCT116
6
enterocyte
4
HCT-116 cell
4
RKO
4
enteric smooth muscle cell
4
rectum smooth muscle tissue
2
enterocyte of epithelium of small intestine
2
paneth cell
2
small intestine goblet cell
1
Caco-2
1
Crypt of Lieberkuhn
1
LoVo
1
colon
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
crypt of Lieberkuhn
1
intestinal epithelial cell
1
intestinal epithelium
1
rectal smooth muscle tissue
1
small intestine - terminal Ileum
Organ
6
intestine
4
large intestine
4
musculature of body
2
epithelium
2
small intestine
Life stage
3
adult
Date released
3
September, 2022
2
November, 2021
1
August, 2017
Software used
2
chromhmm
2
r
1
abc
1
macs
Lab
3
AMP-T2D consortium
2
Bing Ren, UCSD
1
Stephen Parker, UMich
Project
4
AMP
2
ENCODE
RFA
4
AMP
2
ENCODE3
organ_slims!
mammary gland
Showing 6 of 6 results
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Download
FileSet
DSR810KDL
released
Annotation file set
: Candidate regulatory elements for BSS01475 rectum smooth muscle tissue from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR055KZV
released
Annotation file set
: Target gene predictions for BSS01475 rectum smooth muscle tissue from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR614UTJ
released
Annotation file set
: Chromatin states for BSS01475 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR802OCO
released
Annotation file set
: Target gene predictions of Small Intestinal Enterocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR273VIV
released
Annotation file set
: Accessible chromatin annotation of Small Intestinal Enterocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
TSTSR802656
released
Annotation file set
: ChromHMM 13-state model for rectal smooth muscle
Lab:
Stephen Parker, UMich
Project:
AMP