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Citing CMDGA
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Annotation type
candidate regulatory elements
1
accessible chromatin
1
binding sites
1
chromatin state
1
histone modifications
1
target gene predictions
Annotation Category
4
cis-regulatory elements
1
Target gene links
Annotation type Category
4
ChIP-seq
2
DNase-seq
Available data
4
bed bed3+
1
bed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
5
cell line
Biosample term
34
small intestine
29
large intestine
18
coronary artery
16
endothelial cell of hepatic sinusoid
16
tibial artery
14
endothelial cell of umbilical vein
13
sigmoid colon
12
ascending aorta
11
transverse colon
9
aorta
8
colon epithelial cell
7
Peyer's patch
7
smooth muscle cell of the coronary artery
7
thoracic aorta
6
HT-29
6
colonic mucosa
6
enterocyte
6
fibroblast of pulmonary artery
5
Afferent / Efferent Arteriole Endothelial Cell
5
Degenerative Peritubular Capillary Endothelial Cell
5
Glomerular Capillary Endothelial Cell
5
Peritubular Capillary Endothelial Cell
5
SW480
5
duodenal mucosa
5
mucosa of rectum
5
pulmonary artery endothelial cell
4
HCT-116 cell
4
HCT116
4
aortic endothelial cell
4
dermis blood vessel endothelial cell
4
enteric smooth muscle cell
4
kidney capillary endothelial cell
4
muscle layer of colon
4
muscle layer of duodenum
4
pancreatic endothelial cell
3
RKO
3
brain microvascular endothelial cell
3
fibroblast of the aortic adventitia
3
rectum smooth muscle tissue
2
capillary endothelial cell
2
endothelial cell of coronary artery
2
enterocyte of epithelium of small intestine
2
paneth cell
2
small intestine goblet cell
2
vein endothelial cell
1
brain microvascular endothelial cell
1
Crypt of Lieberkuhn
1
abdominal aorta artery
1
aorta wall
1
aortic smooth muscle cell
1
circle of Willis
1
colon
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
crypt of Lieberkuhn
1
intestinal epithelial cell
1
intestinal epithelium
1
placental villus capillary endothelial cell
1
small intestine - terminal Ileum
1
whole blood
Disease term
2
colorectal adenocarcinoma
Organ
5
intestine
5
large intestine
0
blood vessel
Life stage
2
adult
Date released
2
February, 2021
2
September, 2022
1
June, 2020
Software used
3
macs
1
chromhmm
1
r
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
annotation_type!
candidate regulatory elements
Showing 5 of 5 results
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Download
FileSet
DSR610XEI
released
Annotation file set
: Target gene predictions for BSS01682 SW480 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR361WKN
released
Annotation file set
: Chromatin states for BSS01682 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR480BBB
released
Annotation file set
: Histone modifications annotation for Digestive tract SW_480 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR783QVF
released
Annotation file set
: Binding sites annotation for Digestive tract SW_480 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR118XAD
released
Annotation file set
: Accessible chromatin annotation for Digestive tract SW 480 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP