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Citing CMDGA
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Annotation type
8
target gene predictions
2
binding sites
2
candidate regulatory elements
2
chromatin state
1
accessible chromatin
1
histone modifications
Annotation Category
8
Target gene links
Annotation type Category
6
HiC
2
DNase-seq
1
ATAC-seq
1
ChIP-seq
1
H3K27ac ChIP-Seq
Available data
8
bed bed3+
File set status
8
released
Genome assembly (visualization)
8
hg19
6
GRCh38
Organism
8
Homo sapiens
Biosample type
8
cell line
Biosample term
23
K562
17
small intestine
14
large intestine
8
GM12878
7
sigmoid colon
5
transverse colon
4
aorta
4
colon epithelial cell
4
endothelial cell of umbilical vein
3
HCT116
3
Peyer's patch
3
coronary artery
2
GM19238
2
GM19239
2
GM19240
2
HAP-1
2
HT-29
2
NAMALWA cell
2
OCI-LY7
2
ascending aorta
2
colonic mucosa
2
dermis blood vessel endothelial cell
2
duodenal mucosa
2
enteric smooth muscle cell
2
mucosa of rectum
2
muscle layer of colon
2
muscle layer of duodenum
2
thoracic aorta
2
tibial artery
1
CMK
1
GM06990
1
GM12875
1
GM12891
1
GM12892
1
GM18505
1
GM19099
1
GM19193
1
HCT-116 cell
1
HL-60
1
KBM-7
1
NB4
1
RPMI8226
1
SW480
1
brain microvascular endothelial cell
1
enterocyte of epithelium of small intestine
1
fibroblast of pulmonary artery
1
fibroblast of the aortic adventitia
1
kidney capillary endothelial cell
1
paneth cell
1
pulmonary artery endothelial cell
1
rectum smooth muscle tissue
1
small intestine goblet cell
1
smooth muscle cell of the coronary artery
Organ
8
blood
8
bodily fluid
0
blood vessel
0
intestine
Life stage
1
adult
Date released
6
February, 2024
1
May, 2021
1
September, 2022
Software used
1
abc
1
r
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
Showing 8 of 8 results
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Download
FileSet
DSR413SNG
released
Annotation file set
: Target gene predictions from cryomilling TCC protocol variations. in situ crosslinking, with SDS treatment, without restriction digestion
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR828CUR
released
Annotation file set
: Target gene predictions from cryomilling TCC protocol variations. in situ crosslinking, without SDS treatment, without restriction digestion
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR519UOA
released
Annotation file set
: Target gene predictions from cryomilling TCC protocol variations. in vitro crosslinking, with SDS, NcoI digestion
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR974VNF
released
Annotation file set
: Target gene predictions from cryomilling TCC protocol variations. in vitro crosslinking, with SDS, without restriction digestion
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR815MBX
released
Annotation file set
: Target gene predictions from cryomilling TCC protocol variations. in vitro crosslinking, with SDS, with RNase A digestion, without HindIII digestion
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR193AOO
released
Annotation file set
: Target gene predictions from cryomilling TCC protocol variations. in vitro crosslinking, with SDS, HindIII digestion
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR835PAE
released
Annotation file set
: Target gene predictions for BSS00439 GM12878 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR117MIS
released
Annotation file set
: enhancer-gene predicton of GM12878-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP