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Citing CMDGA
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Annotation type
4
target gene predictions
3
accessible chromatin
1
candidate regulatory elements
1
chromatin state
Annotation Category
4
Target gene links
Annotation type Category
3
ATAC-seq
1
ChIP-seq
1
DNase-seq
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
3
GRCh38
Organism
4
Homo sapiens
Biosample type
3
primary cell
1
cell line
Biosample term
17
small intestine
14
large intestine
7
sigmoid colon
5
transverse colon
4
colon epithelial cell
3
HCT116
3
Peyer's patch
3
esophagus
2
HT-29
2
colonic mucosa
2
duodenal mucosa
2
enteric smooth muscle cell
2
esophagus muscularis mucosa
2
esophagus squamous epithelium
2
mucosa of rectum
2
muscle layer of colon
2
muscle layer of duodenum
2
smooth muscle cell of the esophagus
1
HCT-116 cell
1
SW480
1
enterocyte of epithelium of small intestine
1
epithelial cell of esophagus
1
paneth cell
1
rectum smooth muscle tissue
1
small intestine goblet cell
Organ
4
epithelium
4
intestine
4
large intestine
0
esophagus
Life stage
1
unknown
Date released
3
November, 2021
1
September, 2022
Software used
3
abc
1
r
Lab
3
Bing Ren, UCSD
1
AMP-T2D consortium
Project
3
ENCODE
1
AMP
RFA
3
ENCODE3
1
AMP
Showing 4 of 4 results
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Download
FileSet
DSR344FOH
released
Annotation file set
: Target gene predictions for BSS00223 colon epithelial cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR267UWF
released
Annotation file set
: Target gene predictions of Colon Epithelial Cell 3 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR015DAN
released
Annotation file set
: Target gene predictions of Colon Epithelial Cell 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR659KQD
released
Annotation file set
: Target gene predictions of Colon Epithelial Cell 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE