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Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
binding sites
1
candidate regulatory elements
1
histone modifications
Annotation Category
4
cis-regulatory elements
Annotation type Category
3
ChIP-seq
2
DNase-seq
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
4
cell line
Biosample term
63
small intestine
60
placenta
56
large intestine
23
sigmoid colon
23
trophoblast cell
19
transverse colon
16
chorionic villus
14
Peyer's patch
10
chorion membrane
10
colonic mucosa
9
colon epithelial cell
9
duodenal mucosa
9
mucosa of rectum
8
HT-29
8
fibroblast of villous mesenchyme
8
muscle layer of colon
8
muscle layer of duodenum
7
SW480
6
HCT116
6
enterocyte
6
umbilical cord
4
HCT-116 cell
4
RKO
4
amnion
4
enteric smooth muscle cell
4
rectum smooth muscle tissue
3
HTR-8/Svneo
3
amnion mesenchymal stem cell
3
amniotic stem cell
3
epithelial cell of amnion
2
chorion
2
enterocyte of epithelium of small intestine
2
paneth cell
2
small intestine goblet cell
1
Caco-2
1
Crypt of Lieberkuhn
1
LoVo
1
amniotic epithelial cell
1
colon
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
crypt of Lieberkuhn
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
intestinal epithelial cell
1
intestinal epithelium
1
placental hematopoietic stem cell
1
placental villus capillary endothelial cell
1
rectal smooth muscle tissue
1
small intestine - terminal Ileum
1
trophoblast giant cell
Organ
4
intestine
4
large intestine
0
extraembryonic component
Life stage
1
unknown
Date released
3
February, 2021
1
June, 2020
Software used
3
macs
1
encode-ccres
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
Showing 4 of 4 results
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Download
FileSet
DSR837ODF
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE RKO
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR823SVP
released
Annotation file set
: Histone modifications annotation for Digestive tract RKO from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR612HZP
released
Annotation file set
: Binding sites annotation for Digestive tract RKO from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR501BQN
released
Annotation file set
: Accessible chromatin annotation for Digestive tract RKO from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP