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Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
accessible chromatin
1
chromatin state
1
target gene predictions
Annotation Category
4
cis-regulatory elements
1
Target gene links
Annotation type Category
4
ChIP-seq
4
DNase-seq
Available data
4
bed bed3+
1
bed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
5
primary cell
Biosample term
63
small intestine
56
large intestine
40
retina
23
sigmoid colon
20
pigmented layer of retina
19
transverse colon
16
retinal pigment epithelial cell
14
Peyer's patch
10
colonic mucosa
9
colon epithelial cell
9
duodenal mucosa
9
eye
9
mucosa of rectum
8
HT-29
8
WERI-Rb-1
8
muscle layer of colon
8
muscle layer of duodenum
7
SW480
6
HCT116
6
enterocyte
5
fibroblast of the conjunctiva
5
iris pigment epithelial cell
4
HCT-116 cell
4
RKO
4
enteric smooth muscle cell
4
rectum smooth muscle tissue
2
Muller cell
2
enterocyte of epithelium of small intestine
2
paneth cell
2
small intestine goblet cell
1
retinal pigment epithelial cell
1
Caco-2
1
Crypt of Lieberkuhn
1
LoVo
1
colon
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
corneal epithelium
1
crypt of Lieberkuhn
1
intestinal epithelial cell
1
intestinal epithelium
1
rectal smooth muscle tissue
1
retinal bipolar neuron
1
retinal cell
1
small intestine - terminal Ileum
Organ
5
epithelium
5
eye
0
intestine
Life stage
4
unknown
Date released
3
September, 2022
1
February, 2021
1
June, 2020
Software used
2
r
1
chromhmm
1
encode-ccres
1
macs
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
Showing 5 of 5 results
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Download
FileSet
DSR741HXN
released
Annotation file set
: Candidate regulatory elements for BSS00743 iris pigment epithelial cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR523WGB
released
Annotation file set
: Target gene predictions for BSS00743 iris pigment epithelial cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR302XLF
released
Annotation file set
: Chromatin states for BSS00743 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR858CLJ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE iris pigment epithelial cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR950BXJ
released
Annotation file set
: Accessible chromatin annotation for Others HIPEpiC from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP