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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
binding sites
1
accessible chromatin
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Target gene links
Annotation type Category
2
ChIP-seq
2
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
4
cell line
Biosample term
63
small intestine
60
placenta
56
large intestine
40
retina
23
sigmoid colon
23
trophoblast cell
20
pigmented layer of retina
19
transverse colon
16
chorionic villus
16
retinal pigment epithelial cell
14
Peyer's patch
10
chorion membrane
10
colonic mucosa
9
colon epithelial cell
9
duodenal mucosa
9
eye
9
mucosa of rectum
8
HT-29
8
WERI-Rb-1
8
fibroblast of villous mesenchyme
8
muscle layer of colon
8
muscle layer of duodenum
7
SW480
6
HCT116
6
enterocyte
6
umbilical cord
5
fibroblast of the conjunctiva
5
iris pigment epithelial cell
4
HCT-116 cell
4
RKO
4
amnion
4
enteric smooth muscle cell
4
rectum smooth muscle tissue
3
HTR-8/Svneo
3
amnion mesenchymal stem cell
3
amniotic stem cell
3
epithelial cell of amnion
2
Muller cell
2
chorion
2
enterocyte of epithelium of small intestine
2
paneth cell
2
small intestine goblet cell
1
retinal pigment epithelial cell
1
Caco-2
1
Crypt of Lieberkuhn
1
LoVo
1
amniotic epithelial cell
1
colon
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
corneal epithelium
1
crypt of Lieberkuhn
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
intestinal epithelial cell
1
intestinal epithelium
1
placental hematopoietic stem cell
1
placental villus capillary endothelial cell
1
rectal smooth muscle tissue
1
retinal bipolar neuron
1
retinal cell
1
small intestine - terminal Ileum
1
trophoblast giant cell
Organ
4
intestine
4
large intestine
0
extraembryonic component
0
eye
Date released
1
February, 2021
1
June, 2020
1
May, 2021
1
October, 2022
Software used
2
macs
1
abc
1
chromhmm
Lab
3
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
4
AMP
RFA
4
AMP
Showing 4 of 4 results
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Download
FileSet
DSR003UZC
released
Annotation file set
: Binding sites annotation for HCT-116 cell (HCT-116) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR788ZGV
released
Annotation file set
: Binding sites annotation for Digestive tract HCT_116 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR355NCA
released
Annotation file set
: enhancer-gene predicton of HCT116-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR889UTS
released
Annotation file set
: Accessible chromatin annotation for Digestive tract HCT 116 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP