Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
candidate regulatory elements
1
chromatin state
1
histone modifications
1
target gene predictions
Annotation Category
4
cis-regulatory elements
1
Target gene links
Annotation type Category
4
ChIP-seq
3
DNase-seq
Available data
4
bed bed3+
1
bed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
5
cell line
Biosample term
63
small intestine
55
large intestine
23
sigmoid colon
19
transverse colon
14
Peyer's patch
10
colonic mucosa
9
colon epithelial cell
9
duodenal mucosa
9
mucosa of rectum
8
HT-29
8
muscle layer of colon
8
muscle layer of duodenum
7
SW480
5
GM18507
4
HCT-116 cell
4
HCT116
4
RKO
4
enteric smooth muscle cell
4
rectum smooth muscle tissue
3
enterocyte
3
germinal center
2
enterocyte of epithelium of small intestine
2
paneth cell
2
small intestine goblet cell
1
Caco-2
1
Crypt of Lieberkuhn
1
LoVo
1
colon
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
crypt of Lieberkuhn
1
intestinal epithelial cell
1
intestinal epithelium
1
rectal smooth muscle tissue
1
small intestine - terminal Ileum
Organ
5
lymphoid tissue
0
intestine
Date released
3
September, 2022
1
February, 2021
February, 2024
1
June, 2020
Software used
2
macs
2
r
1
chromhmm
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
month_released!
February, 2024
Showing 5 of 5 results
table-tab-icon
matrix-icon
Download
FileSet
DSR886WMC
released
Annotation file set
: Candidate regulatory elements for BSS00462 GM18507 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR469HAD
released
Annotation file set
: Target gene predictions for BSS00462 GM18507 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR503YIU
released
Annotation file set
: Chromatin states for BSS00462 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR181SVH
released
Annotation file set
: Histone modifications annotation for Blood GM18507 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR632NNZ
released
Annotation file set
: Accessible chromatin annotation for Blood GM18507 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP