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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
target gene predictions
1
chromatin state
Annotation Category
3
cis-regulatory elements
2
Target gene links
Annotation type Category
4
ChIP-seq
4
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
4
bed bed3+
1
bed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
5
cell line
Biosample term
63
small intestine
56
large intestine
45
islet of Langerhans
25
pancreatic ductal cell
24
body of pancreas
23
sigmoid colon
22
pancreas
21
EndoC_BH1
19
transverse colon
18
pancreatic acinar cell
18
pancreatic beta cell
17
pancreatic alpha cell
16
pancreatic delta cell
15
endocrine pancreas
14
Peyer's patch
10
colonic mucosa
10
pancreatic stellate cell
9
colon epithelial cell
9
duodenal mucosa
9
mucosa of rectum
8
HT-29
8
muscle layer of colon
8
muscle layer of duodenum
7
SW480
6
HCT116
6
enterocyte
6
pancreatic polypeptide-secreting cell
5
Panc1
4
HCT-116 cell
4
RKO
4
enteric smooth muscle cell
4
pancreatic A cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
rectum smooth muscle tissue
4
type B pancreatic cell
3
8988T
3
HPDE6-E6E7
3
pancreatic quiescent stellate cell
2
enterocyte of epithelium of small intestine
2
pancreatic endocrine cell
2
paneth cell
2
small intestine goblet cell
1
Caco-2
1
Crypt of Lieberkuhn
1
LoVo
1
activated pancreatic stellate cell
1
colon
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
crypt of Lieberkuhn
1
intestinal epithelial cell
1
intestinal epithelium
1
pancreatic D cell
1
pancreatic PP cell
1
quiescent pancreatic stellate cell
1
rectal smooth muscle tissue
1
small intestine - terminal Ileum
Disease term
3
pancreatic ductal adenocarcinoma
Organ
5
pancreas
0
intestine
Life stage
4
unknown
Date released
3
September, 2022
1
February, 2021
1
May, 2021
Software used
2
r
1
abc
1
chromhmm
1
encode-ccres
Lab
4
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
5
AMP
RFA
5
AMP
Showing 5 of 5 results
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Download
FileSet
DSR623CCG
released
Annotation file set
: Candidate regulatory elements for BSS01405 Panc1 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR898MBY
released
Annotation file set
: Target gene predictions for BSS01405 Panc1 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR991ZNU
released
Annotation file set
: Chromatin states for BSS01405 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR014CHT
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE Panc1
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR988OGT
released
Annotation file set
: enhancer-gene predicton of Panc1-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP