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Schema
Citing CMDGA
Clear Filters
Annotation type
2
binding sites
1
accessible chromatin
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Target gene links
Annotation type Category
2
ChIP-seq
2
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
4
cell line
Biosample term
63
small intestine
56
large intestine
40
renal pelvis
23
sigmoid colon
19
transverse colon
14
Peyer's patch
12
left renal pelvis
12
right renal pelvis
10
colonic mucosa
9
colon epithelial cell
9
duodenal mucosa
9
mucosa of rectum
8
HT-29
8
muscle layer of colon
8
muscle layer of duodenum
7
SW480
6
HCT116
6
enterocyte
4
HCT-116 cell
4
RKO
4
enteric smooth muscle cell
4
rectum smooth muscle tissue
2
enterocyte of epithelium of small intestine
2
paneth cell
2
small intestine goblet cell
1
Caco-2
1
Crypt of Lieberkuhn
1
LoVo
1
colon
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
crypt of Lieberkuhn
1
intestinal epithelial cell
1
intestinal epithelium
1
rectal smooth muscle tissue
1
small intestine - terminal Ileum
Organ
4
intestine
4
large intestine
0
ureter
Date released
1
February, 2021
1
June, 2020
1
May, 2021
1
October, 2022
Software used
2
macs
1
abc
1
chromhmm
Lab
3
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
4
AMP
RFA
4
AMP
Showing 4 of 4 results
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Download
FileSet
DSR003UZC
released
Annotation file set
: Binding sites annotation for HCT-116 cell (HCT-116) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR788ZGV
released
Annotation file set
: Binding sites annotation for Digestive tract HCT_116 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR355NCA
released
Annotation file set
: enhancer-gene predicton of HCT116-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR889UTS
released
Annotation file set
: Accessible chromatin annotation for Digestive tract HCT 116 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP