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Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
candidate regulatory elements
1
chromatin state
1
histone modifications
1
target gene predictions
Annotation Category
4
cis-regulatory elements
1
Target gene links
Annotation type Category
4
ChIP-seq
3
DNase-seq
Available data
4
bed bed3+
1
bed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
4
cell line
1
in vitro differentiated cells
Biosample term
74
kidney
41
right kidney
40
renal cortex interstitium
40
renal pelvis
36
left kidney
12
left renal pelvis
12
right renal pelvis
11
left renal cortex interstitium
10
right renal cortex interstitium
9
HEK293
9
kidney tubule cell
8
glomerular visceral epithelial cell
7
epithelial cell of proximal tubule
7
renal cortical epithelial cell
6
glomerular endothelial cell
6
kidney epithelial cell
6
kidney glomerular epithelial cell
5
ACHN
5
Caki2
5
RCC 7860
5
renal cell carcinoma
4
G401
4
kidney capillary endothelial cell
3
HEK293T
3
cortex of kidney
2
kidney epithelium
1
left kidney
1
RCC
1
glomerular epithelium
1
kidney distal convoluted tubule epithelial cell
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
metanephros
1
nephron tubule
1
parietal epithelial cell
1
renal connecting tubule
1
renal cortex tubule
1
renal glomerulus
1
renal intercalated cell
1
renal principal cell
1
ureteric bud
Organ
5
kidney
Life stage
3
adult
Date released
3
September, 2022
1
February, 2021
1
June, 2020
Software used
2
macs
2
r
1
chromhmm
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
Showing 5 of 5 results
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Download
FileSet
DSR155SVZ
released
Annotation file set
: Candidate regulatory elements for BSS01481 renal cell carcinoma from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR881RBC
released
Annotation file set
: Target gene predictions for BSS01481 renal cell carcinoma from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR887WYK
released
Annotation file set
: Chromatin states for BSS01481 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR283ABW
released
Annotation file set
: Histone modifications annotation for Kidney Carcinoma,_Renal_Cell from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR002SLX
released
Annotation file set
: Accessible chromatin annotation for Kidney Carcinoma, Renal Cell from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP