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Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
candidate regulatory elements
Annotation Category
2
cis-regulatory elements
Annotation type Category
1
ChIP-seq
1
DNase-seq
1
snATAC-seq
Available data
2
bed bed3+
1
bigWig
File set status
2
released
Genome assembly (visualization)
2
hg19
1
GRCh38
Organism
2
Homo sapiens
Biosample type
1
cell line
1
primary cell
Biosample term
39
kidney
20
epithelial cell of proximal tubule
18
glomerular endothelial cell
13
renal cortex interstitium
13
renal pelvis
12
right kidney
10
glomerular visceral epithelial cell
9
left kidney
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
6
HEK293
6
left renal cortex interstitium
6
left renal pelvis
6
right renal pelvis
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
Connecting Tubule Cell
5
Cortical Thick Ascending Limb Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Medullary Thick Ascending Limb Cell
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Renin-positive Juxtaglomerular Granular Cell
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney glomerular epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
renal cortical epithelial cell
5
right renal cortex interstitium
4
cortex of kidney
4
kidney connecting tubule epithelial cell
4
kidney epithelial cell
4
kidney tubule cell
3
S-shaped body
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
2
ACHN
2
Caki2
2
RCC 7860
2
kidney capillary endothelial cell
2
kidney epithelium
2
kidney inner medulla collecting duct intercalated cell
2
metanephros
2
renal cell carcinoma
2
renal connecting tubule
2
renal principal cell
2
ureteric bud
1
left kidney
1
G401
1
RCC
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
epithelial cell of distal tubule
1
glomerular epithelium
1
kidney - cortex
1
kidney - medulla
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial fibroblast
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
nephron tubule
1
parietal epithelial cell
1
proximal tubule
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal cortex tubule
1
renal glomerulus
1
renal intercalated cell
Organ
2
kidney
1
epithelium
Life stage
1
young adult
Date released
September, 2022
1
February, 2021
1
November, 2021
Software used
1
encode-ccres
1
macs
Lab
1
AMP-T2D consortium
1
Bing Ren, UCSD
Project
1
AMP
1
ENCODE
RFA
1
AMP
1
ENCODE3
month_released!
September, 2022
Showing 2 of 2 results
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Download
FileSet
DSR186LXU
released
Annotation file set
: Accessible chromatin annotation of Fetal Parietal,Chief Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR093VBX
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE G401
Lab:
AMP-T2D consortium
Project:
AMP