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Schema
Citing CMDGA
Clear Filters
Annotation type
3
accessible chromatin
2
candidate regulatory elements
1
chromatin state
1
target gene predictions
1
variant allelic effects
Annotation Category
6
cis-regulatory elements
Gene expression levels
1
Genetic variant effects
1
Target gene links
Annotation type Category
6
DNase-seq
4
ChIP-seq
1
ATAC-seq
Available data
7
bed bed3+
2
bigWig
1
bed bed9
File set status
8
released
Genome assembly (visualization)
8
hg19
2
GRCh38
Organism
8
Homo sapiens
Biosample type
6
primary cell
2
cell line
Biosample term
74
kidney
42
right kidney
40
renal cortex interstitium
40
renal pelvis
36
left kidney
12
left renal cortex interstitium
12
left renal pelvis
12
right renal pelvis
11
right renal cortex interstitium
9
HEK293
9
kidney tubule cell
8
glomerular visceral epithelial cell
7
epithelial cell of proximal tubule
7
glomerular endothelial cell
7
kidney glomerular epithelial cell
7
renal cortical epithelial cell
6
kidney epithelial cell
5
ACHN
5
Caki2
5
RCC 7860
5
kidney capillary endothelial cell
5
renal cell carcinoma
4
G401
4
cortex of kidney
3
HEK293T
2
kidney epithelium
1
left kidney
1
RCC
1
glomerular epithelium
1
kidney distal convoluted tubule epithelial cell
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
metanephros
1
nephron tubule
1
parietal epithelial cell
1
renal connecting tubule
1
renal cortex tubule
1
renal glomerulus
1
renal intercalated cell
1
renal principal cell
1
ureteric bud
Organ
8
epithelium
8
kidney
Life stage
4
child
1
adult
1
young adult
Date released
3
September, 2022
1
August, 2021
1
February, 2021
1
January, 2020
1
June, 2020
1
May, 2020
Software used
3
macs
2
r
1
chromhmm
1
deltasvm
1
encode-ccres
Lab
7
AMP-T2D consortium
1
Katalin Susztak, Upenn
Project
8
AMP
RFA
7
AMP
1
AMP2
annotation_category!
Gene expression levels
Showing 8 of 8 results
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Download
FileSet
DSR003INP
released
Annotation file set
: Candidate regulatory elements for BSS00389 glomerular visceral epithelial cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR691IPC
released
Annotation file set
: Target gene predictions for BSS00389 glomerular visceral epithelial cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR420PUK
released
Annotation file set
: Chromatin states for BSS00389 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR236ODB
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE glomerular visceral epithelial cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR884VIR
released
Annotation file set
: Accessible chromatin from Katalin Susztak 75kidney Project of Podocytes
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR012KGK
released
Annotation file set
: Accessible chromatin annotation for Kidney Glomerular visceral epithelial cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR372RJW
released
Annotation file set
: Genetic variants with deltaSVM predictions in kidney podocyte DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR855KHX
released
Annotation file set
: Accessible chromatin annotation of kidney podocytes (glomerular visceral epithelial cell) from GSE115961 DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP