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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
2
candidate regulatory elements
1
chromatin state
1
gene expression
1
target gene predictions
1
variant allelic effects
Annotation Category
2
cis-regulatory elements
1
Gene expression levels
Annotation type Category
2
ChIP-seq
2
DNase-seq
1
RNA-seq
Available data
2
bed bed3+
File set status
3
released
Genome assembly (visualization)
2
hg19
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
36
kidney
20
renal cortex interstitium
20
right kidney
19
renal pelvis
18
epithelial cell of proximal tubule
18
left kidney
16
glomerular endothelial cell
7
glomerular visceral epithelial cell
7
kidney loop of Henle thin ascending limb epithelial cell
6
kidney interstitial cell
6
left renal cortex interstitium
6
left renal pelvis
6
right renal pelvis
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
right renal cortex interstitium
4
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
4
kidney tubule cell
3
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
Afferent / Efferent Arteriole Endothelial Cell
3
Connecting Tubule Cell
3
Cortical Thick Ascending Limb Cell
3
Degenerative Connecting Tubule Cell
3
Degenerative Connecting Tubule Cell / Principal Cell
3
Degenerative Cortical Thick Ascending Limb Cell
3
Degenerative Distal Convoluted Tubule Cell
3
Degenerative Intercalated Cell Type A
3
Degenerative Peritubular Capillary Endothelial Cell
3
Degenerative Principal Cell
3
Degenerative Proximal Tubule Epithelial Cell
3
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
Descending Thin Limb Cell Type 1
3
Distal Convoluted Tubule Cell Type 1
3
Glomerular Capillary Endothelial Cell
3
HEK293
3
Intercalated Cell Type A
3
Intercalated Cell Type B
3
Medullary Thick Ascending Limb Cell
3
Parietal Epithelial Cell
3
Peritubular Capillary Endothelial Cell
3
Podocyte
3
Principal Cell
3
Proximal Tubule Epithelial Cell Segment 1 and 2
3
Proximal Tubule Epithelial Cell Segment 3
3
Renin-positive Juxtaglomerular Granular Cell
3
S-shaped body
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney epithelial cell
3
kidney glomerular epithelial cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
renal cortical epithelial cell
2
ACHN
2
Caki2
2
G401
2
RCC 7860
2
kidney inner medulla collecting duct intercalated cell
1
HEK293T
1
RCC
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
epithelial cell of distal tubule
1
kidney - cortex
1
kidney - medulla
1
kidney capillary endothelial cell
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial fibroblast
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
metanephros
1
proximal tubule
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal cell carcinoma
1
renal connecting tubule
1
renal principal cell
1
ureteric bud
Organ
3
epithelium
3
kidney
Life stage
2
unknown
1
adult
Date released
1
February, 2020
1
February, 2021
1
September, 2022
Software used
2
r
1
encode-ccres
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
Showing 3 of 3 results
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Download
FileSet
DSR879POD
released
Annotation file set
: Candidate regulatory elements for BSS01491 renal cortical epithelial cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR925XQP
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE renal cortical epithelial cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR564RKB
released
Annotation file set
: Gene expression levels of Kidney renal cortical epithelial cell from RNA-seq (ENCODE)
Lab:
AMP-T2D consortium
Project:
AMP