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Schema
Citing CMDGA
Clear Filters
Annotation type
candidate regulatory elements
3
chromatin state
2
target gene predictions
1
histone modifications
Annotation Category
4
cis-regulatory elements
2
Target gene links
Annotation type Category
6
ChIP-seq
2
DNase-seq
Available data
4
bed bed3+
2
bed bed9
File set status
6
released
Genome assembly (visualization)
6
hg19
2
GRCh38
Organism
6
Homo sapiens
Biosample type
6
tissue
Biosample term
29
large intestine
13
sigmoid colon
11
transverse colon
8
colon epithelial cell
6
HT-29
6
colonic mucosa
5
SW480
5
mucosa of rectum
4
HCT-116 cell
4
HCT116
4
muscle layer of colon
3
RKO
3
rectum smooth muscle tissue
1
colon
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
Organ
6
intestine
6
large intestine
Life stage
4
adult
Date released
4
September, 2022
1
August, 2017
1
February, 2021
Software used
3
chromhmm
2
r
1
macs
Lab
5
AMP-T2D consortium
1
Stephen Parker, UMich
Project
6
AMP
RFA
6
AMP
annotation_type!
candidate regulatory elements
Showing 6 of 6 results
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Download
FileSet
DSR662EED
released
Annotation file set
: Target gene predictions for BSS00228 colonic mucosa from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR273CDR
released
Annotation file set
: Target gene predictions for BSS00227 colonic mucosa from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR663ZTW
released
Annotation file set
: Chromatin states for BSS00228 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR230SUN
released
Annotation file set
: Chromatin states for BSS00227 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR128RIZ
released
Annotation file set
: Histone modifications annotation for Digestive tract Colonic_mucosa from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR420347
released
Annotation file set
: ChromHMM 13-state model for Colonic mucosa
Lab:
Stephen Parker, UMich
Project:
AMP