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Schema
Citing CMDGA
Clear Filters
Annotation type
binding sites
1
accessible chromatin
1
target gene predictions
Annotation Category
1
Target gene links
1
cis-regulatory elements
Annotation type Category
2
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
2
bed bed3+
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
2
cell line
Biosample term
56
large intestine
23
sigmoid colon
19
transverse colon
10
colonic mucosa
9
colon epithelial cell
9
mucosa of rectum
8
muscle layer of colon
7
HT-29
6
HCT116
6
SW480
4
rectum smooth muscle tissue
3
RKO
2
HCT-116 cell
1
Caco-2
1
LoVo
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
rectal smooth muscle tissue
Organ
2
intestine
2
large intestine
Date released
1
June, 2020
1
May, 2021
Software used
1
abc
1
macs
Lab
1
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
2
AMP
RFA
2
AMP
annotation_type!
binding sites
Showing 2 of 2 results
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Download
FileSet
DSR355NCA
released
Annotation file set
: enhancer-gene predicton of HCT116-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR889UTS
released
Annotation file set
: Accessible chromatin annotation for Digestive tract HCT 116 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP