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Schema
Citing CMDGA
Clear Filters
Annotation type
5
candidate regulatory elements
5
chromatin state
3
target gene predictions
1
histone modifications
Annotation Category
6
cis-regulatory elements
Annotation type Category
6
ChIP-seq
Available data
3
bed bed3+
3
bed bed9
File set status
6
released
Genome assembly (visualization)
6
hg19
3
GRCh38
Organism
6
Homo sapiens
Biosample type
6
tissue
Biosample term
14
large intestine
5
sigmoid colon
4
colonic mucosa
4
transverse colon
3
mucosa of rectum
2
HT-29
2
SW480
2
muscle layer of colon
2
rectum smooth muscle tissue
1
HCT116
1
RKO
1
colon epithelial cell
Organ
6
intestine
6
large intestine
2
musculature of body
Life stage
3
adult
Date released
3
September, 2022
2
August, 2017
1
February, 2021
Software used
5
chromhmm
1
macs
Lab
4
AMP-T2D consortium
2
Stephen Parker, UMich
Project
6
AMP
RFA
6
AMP
Showing 6 of 6 results
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FileSet
DSR614UTJ
released
Annotation file set
: Chromatin states for BSS01475 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR663ZTW
released
Annotation file set
: Chromatin states for BSS00228 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR230SUN
released
Annotation file set
: Chromatin states for BSS00227 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR128RIZ
released
Annotation file set
: Histone modifications annotation for Digestive tract Colonic_mucosa from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR802656
released
Annotation file set
: ChromHMM 13-state model for rectal smooth muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR420347
released
Annotation file set
: ChromHMM 13-state model for Colonic mucosa
Lab:
Stephen Parker, UMich
Project:
AMP