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Schema
Citing CMDGA
Clear Filters
Annotation type
4
candidate regulatory elements
3
chromatin state
2
target gene predictions
1
histone modifications
Annotation Category
3
cis-regulatory elements
2
Target gene links
Annotation type Category
5
ChIP-seq
2
DNase-seq
Available data
3
bed bed3+
2
bed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
2
GRCh38
Organism
5
Homo sapiens
Biosample type
5
tissue
Biosample term
27
large intestine
12
sigmoid colon
9
transverse colon
5
colon epithelial cell
5
colonic mucosa
5
mucosa of rectum
4
HCT116
4
muscle layer of colon
3
HT-29
3
rectum smooth muscle tissue
2
SW480
1
HCT-116 cell
Organ
5
intestine
5
large intestine
Life stage
4
adult
Date released
4
September, 2022
1
August, 2017
Software used
3
chromhmm
2
r
Lab
4
AMP-T2D consortium
1
Stephen Parker, UMich
Project
5
AMP
RFA
5
AMP
Showing 5 of 5 results
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Download
FileSet
DSR662EED
released
Annotation file set
: Target gene predictions for BSS00228 colonic mucosa from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR273CDR
released
Annotation file set
: Target gene predictions for BSS00227 colonic mucosa from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR663ZTW
released
Annotation file set
: Chromatin states for BSS00228 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR230SUN
released
Annotation file set
: Chromatin states for BSS00227 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR420347
released
Annotation file set
: ChromHMM 13-state model for Colonic mucosa
Lab:
Stephen Parker, UMich
Project:
AMP