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Schema
Citing CMDGA
Clear Filters
Annotation type
3
chromatin state
2
candidate regulatory elements
1
histone modifications
0
target gene predictions
Annotation Category
3
cis-regulatory elements
Annotation type Category
3
ChIP-seq
Available data
2
bed bed9
1
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
2
GRCh38
Organism
3
Homo sapiens
Biosample type
3
tissue
Biosample term
14
large intestine
7
sigmoid colon
5
transverse colon
4
colon epithelial cell
3
HCT116
3
colonic mucosa
3
mucosa of rectum
2
HT-29
2
muscle layer of colon
2
rectum smooth muscle tissue
1
HCT-116 cell
1
SW480
Organ
3
intestine
3
large intestine
Life stage
2
adult
Date released
2
September, 2022
1
August, 2017
Software used
3
chromhmm
r
Lab
2
AMP-T2D consortium
1
Stephen Parker, UMich
Project
3
AMP
RFA
3
AMP
software_used.software.name!
r
Showing 3 of 3 results
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FileSet
DSR663ZTW
released
Annotation file set
: Chromatin states for BSS00228 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR230SUN
released
Annotation file set
: Chromatin states for BSS00227 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR420347
released
Annotation file set
: ChromHMM 13-state model for Colonic mucosa
Lab:
Stephen Parker, UMich
Project:
AMP