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Schema
Citing CMDGA
Clear Filters
Annotation type
4
candidate regulatory elements
3
chromatin state
Annotation Category
7
cis-regulatory elements
Target gene links
Annotation type Category
7
ChIP-seq
4
DNase-seq
Available data
5
bed bed3+
2
bed bed9
File set status
7
released
Genome assembly (visualization)
7
hg19
2
GRCh38
Organism
7
Homo sapiens
Biosample type
7
tissue
Biosample term
42
large intestine
16
sigmoid colon
14
transverse colon
8
colonic mucosa
7
mucosa of rectum
6
HT-29
6
SW480
6
muscle layer of colon
5
colon epithelial cell
4
RKO
3
HCT-116 cell
3
HCT116
3
rectum smooth muscle tissue
1
Caco-2
1
LoVo
1
colon
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
rectal smooth muscle tissue
Organ
7
intestine
7
large intestine
Life stage
6
adult
Date released
4
September, 2022
2
February, 2021
1
August, 2017
Software used
3
chromhmm
2
encode-ccres
2
r
Lab
6
AMP-T2D consortium
1
Stephen Parker, UMich
Project
7
AMP
RFA
7
AMP
annotation_category!
Target gene links
Showing 7 of 7 results
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Download
FileSet
DSR764EPV
released
Annotation file set
: Candidate regulatory elements for BSS01283 mucosa of rectum from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR896LRU
released
Annotation file set
: Candidate regulatory elements for BSS01282 mucosa of rectum from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR180ELA
released
Annotation file set
: Chromatin states for BSS01283 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR346ASL
released
Annotation file set
: Chromatin states for BSS01282 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR024EBX
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mucosa of rectum
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR719BGJ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mucosa of rectum
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR362251
released
Annotation file set
: ChromHMM 13-state model for Rectal mucosa
Lab:
Stephen Parker, UMich
Project:
AMP