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Schema
Citing CMDGA
Clear Filters
Annotation type
4
candidate regulatory elements
2
target gene predictions
1
chromatin state
Annotation Category
5
cis-regulatory elements
2
Target gene links
Annotation type Category
7
ChIP-seq
6
DNase-seq
Available data
7
bed bed3+
File set status
7
released
Genome assembly (visualization)
9
hg19
GRCh38
Organism
7
Homo sapiens
Biosample type
7
tissue
Biosample term
43
large intestine
18
sigmoid colon
14
transverse colon
8
colonic mucosa
7
HT-29
7
mucosa of rectum
6
SW480
6
muscle layer of colon
4
HCT-116 cell
4
RKO
3
HCT116
3
rectum smooth muscle tissue
2
colon epithelial cell
1
Caco-2
1
LoVo
1
colon
1
colon - sigmoid
1
colon - transverse
1
rectal smooth muscle tissue
Organ
7
intestine
7
large intestine
Life stage
6
adult
Date released
4
September, 2022
2
February, 2021
1
August, 2017
Software used
4
r
2
encode-ccres
1
chromhmm
Lab
6
AMP-T2D consortium
1
Stephen Parker, UMich
Project
7
AMP
RFA
7
AMP
assembly!
GRCh38
Showing 7 of 7 results
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Download
FileSet
DSR764EPV
released
Annotation file set
: Candidate regulatory elements for BSS01283 mucosa of rectum from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR896LRU
released
Annotation file set
: Candidate regulatory elements for BSS01282 mucosa of rectum from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR239RIF
released
Annotation file set
: Target gene predictions for BSS01283 mucosa of rectum from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR280IFY
released
Annotation file set
: Target gene predictions for BSS01282 mucosa of rectum from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR024EBX
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mucosa of rectum
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR719BGJ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mucosa of rectum
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR362251
released
Annotation file set
: ChromHMM 13-state model for Rectal mucosa
Lab:
Stephen Parker, UMich
Project:
AMP