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Citing CMDGA
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Annotation type
3
candidate regulatory elements
1
chromatin state
1
histone modifications
Annotation Category
5
cis-regulatory elements
Annotation type Category
5
ChIP-seq
3
DNase-seq
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
4
tissue
1
cell line
Biosample term
18
large intestine
8
sigmoid colon
7
transverse colon
6
colon epithelial cell
5
HT-29
4
HCT-116 cell
4
RKO
4
SW480
4
colonic mucosa
3
HCT116
3
mucosa of rectum
2
muscle layer of colon
1
Caco-2
1
LoVo
1
colon
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
rectal smooth muscle tissue
1
rectum smooth muscle tissue
Organ
5
intestine
5
large intestine
Life stage
3
adult
Date released
September, 2022
4
February, 2021
1
August, 2017
Software used
3
encode-ccres
1
chromhmm
1
macs
Lab
4
AMP-T2D consortium
1
Stephen Parker, UMich
Project
5
AMP
RFA
5
AMP
month_released!
September, 2022
Showing 5 of 5 results
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Download
FileSet
DSR739FCW
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE LoVo
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR389KXN
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE colonic mucosa
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR504AUN
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE colonic mucosa
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR128RIZ
released
Annotation file set
: Histone modifications annotation for Digestive tract Colonic_mucosa from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR420347
released
Annotation file set
: ChromHMM 13-state model for Colonic mucosa
Lab:
Stephen Parker, UMich
Project:
AMP