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Schema
Citing CMDGA
Clear Filters
Annotation type
5
candidate regulatory elements
2
target gene predictions
1
accessible chromatin
Annotation Category
5
cis-regulatory elements
2
Target gene links
Annotation type Category
6
DNase-seq
5
ChIP-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
7
bed bed3+
File set status
7
released
Genome assembly (visualization)
7
hg19
Organism
7
Homo sapiens
Biosample type
7
tissue
Biosample term
16
large intestine
7
sigmoid colon
5
transverse colon
3
HCT116
3
colon epithelial cell
2
HT-29
2
colonic mucosa
2
mucosa of rectum
2
muscle layer of colon
1
Caco-2
1
HCT-116 cell
1
LoVo
1
RKO
1
SW480
1
rectal smooth muscle tissue
Organ
7
intestine
7
large intestine
Life stage
4
adult
1
young adult
Date released
September, 2022
5
February, 2021
1
March, 2020
1
May, 2021
Software used
5
encode-ccres
1
abc
1
nospecificsoft_customcode
Lab
6
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
7
AMP
RFA
7
AMP
month_released!
September, 2022
Showing 7 of 7 results
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Download
FileSet
DSR867DET
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE sigmoid colon
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR541SVN
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE sigmoid colon
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR429OJV
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE sigmoid colon
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR850SQU
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE sigmoid colon
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR944WVE
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE sigmoid colon
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR284ZHE
released
Annotation file set
: enhancer-gene predicton of sigmoid_colon-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR074OIQ
released
Annotation file set
: A target gene prediction annotation in Human Sigmoid Colon of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP