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Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
target gene predictions
1
accessible chromatin
1
binding sites
1
chromatin state
1
histone modifications
Annotation Category
6
cis-regulatory elements
2
Target gene links
Annotation type Category
6
ChIP-seq
5
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
7
bed bed3+
1
bed bed9
File set status
8
released
Genome assembly (visualization)
8
hg19
1
GRCh38
Organism
8
Homo sapiens
Biosample type
8
cell line
Biosample term
90
heart
56
large intestine
34
heart left ventricle
23
sigmoid colon
21
coronary artery
19
heart right ventricle
19
right atrium auricular region
19
transverse colon
17
fibroblast of cardiac tissue
12
left cardiac atrium
10
colonic mucosa
9
colon epithelial cell
9
mucosa of rectum
8
HT-29
8
muscle layer of colon
8
right cardiac atrium
7
SW480
7
smooth muscle cell of the coronary artery
6
HCT116
5
left ventricle myocardium
4
HCT-116 cell
4
RKO
4
cardiac fibroblast
4
rectum smooth muscle tissue
3
endocardial cell
2
cardiac endothelial cell
2
cardiac muscle myoblast
2
endothelial cell of coronary artery
2
ventricular cardiac muscle cell
1
Caco-2
1
LoVo
1
aortic valve
1
cardiac atrium fibroblast
1
cardiac ventricle
1
cardiac ventricle fibroblast
1
colon
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
fetal heart
1
mitral valve
1
pulmonary valve
1
rectal smooth muscle tissue
1
tricuspid valve
Disease term
3
colorectal adenocarcinoma
Organ
8
intestine
8
large intestine
0
heart
Life stage
4
adult
Date released
3
February, 2021
3
September, 2022
1
June, 2020
1
May, 2021
Software used
3
macs
2
r
1
abc
1
chromhmm
1
encode-ccres
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
Showing 8 of 8 results
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Download
FileSet
DSR691VDL
released
Annotation file set
: Candidate regulatory elements for BSS00708 HT-29 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR883VDG
released
Annotation file set
: Target gene predictions for BSS00708 HT-29 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR895ABN
released
Annotation file set
: Chromatin states for BSS00708 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR760JIZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE HT-29
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR582VBD
released
Annotation file set
: Histone modifications annotation for Digestive tract HT-29 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR168GZG
released
Annotation file set
: Binding sites annotation for Digestive tract HT-29 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR797VJC
released
Annotation file set
: enhancer-gene predicton of HT29 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR208YEV
released
Annotation file set
: Accessible chromatin annotation for Digestive tract HT-29 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP