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Schema
Citing CMDGA
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Annotation type
8
candidate regulatory elements
4
chromatin state
3
target gene predictions
2
histone modifications
1
accessible chromatin
1
binding sites
Annotation Category
4
cis-regulatory elements
Annotation type Category
4
ChIP-seq
Available data
3
bed bed9
1
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
3
GRCh38
Organism
4
Homo sapiens
Biosample type
3
tissue
1
primary cell
Biosample term
13
large intestine
5
sigmoid colon
4
foreskin keratinocyte
4
transverse colon
3
colonic mucosa
3
mucosa of rectum
2
foreskin fibroblast
2
muscle layer of colon
2
rectum smooth muscle tissue
1
EH
1
EL
1
ELR
1
HCT116
1
HT-29
1
SW480
1
colon epithelial cell
1
foreskin melanocyte
Organ
3
intestine
3
large intestine
1
penis
Life stage
2
adult
1
newborn
Date released
3
September, 2022
1
August, 2017
Software used
4
chromhmm
Lab
3
AMP-T2D consortium
1
Stephen Parker, UMich
Project
4
AMP
RFA
4
AMP
Showing 4 of 4 results
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FileSet
DSR377XRZ
released
Annotation file set
: Chromatin states for BSS00368 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR663ZTW
released
Annotation file set
: Chromatin states for BSS00228 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR230SUN
released
Annotation file set
: Chromatin states for BSS00227 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR420347
released
Annotation file set
: ChromHMM 13-state model for Colonic mucosa
Lab:
Stephen Parker, UMich
Project:
AMP