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Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
chromatin state
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Target gene links
Annotation type Category
4
ChIP-seq
3
DNase-seq
Available data
3
bed bed3+
1
bed bed9
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
4
cell line
Biosample term
56
large intestine
23
sigmoid colon
22
foreskin keratinocyte
19
foreskin fibroblast
19
transverse colon
10
colonic mucosa
9
colon epithelial cell
9
foreskin melanocyte
9
mucosa of rectum
8
HT-29
8
muscle layer of colon
7
SW480
6
HCT116
4
EH
4
EL
4
ELR
4
HCT-116 cell
4
RKO
4
femur
4
rectum smooth muscle tissue
3
arm bone
3
leg bone
2
skin of prepuce of penis
1
Caco-2
1
LoVo
1
colon
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
proximal epiphysis
1
proximal epiphysis of femur
1
proximal epiphysis of humerus
1
proximal epiphysis of tibia
1
rectal smooth muscle tissue
Organ
4
penis
0
large intestine
0
skeleton
Life stage
3
newborn
1
postnatal
Date released
3
September, 2022
1
February, 2021
Software used
2
r
1
chromhmm
1
encode-ccres
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
Showing 4 of 4 results
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Download
FileSet
DSR589YDI
released
Annotation file set
: Candidate regulatory elements for BSS00275 EH from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR754LTR
released
Annotation file set
: Target gene predictions for BSS00275 EH from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR752ZBL
released
Annotation file set
: Chromatin states for BSS00275 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR483QPJ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE EH
Lab:
AMP-T2D consortium
Project:
AMP