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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
target gene predictions
1
accessible chromatin
binding sites
1
chromatin state
1
histone modifications
Annotation Category
5
cis-regulatory elements
2
Target gene links
Annotation type Category
5
ChIP-seq
5
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
6
bed bed3+
1
bed bed9
File set status
7
released
Genome assembly (visualization)
7
hg19
1
GRCh38
Organism
7
Homo sapiens
Biosample type
7
cell line
Biosample term
67
muscle of arm
58
muscle of leg
39
K562
25
tibial nerve
19
tibial artery
18
gastrocnemius medialis
14
GM12878
10
lower leg skin
8
limb
7
HAP-1
7
NAMALWA cell
7
OCI-LY7
6
CMK
6
GM06990
6
GM19240
6
GM23248
6
HL-60
6
RPMI8226
5
GM12875
5
GM19238
5
GM19239
5
KBM-7
5
gastrocnemius medialis(Muscle - Skeletal)
5
peripheral blood mononuclear cell
4
DOHH2
4
GM12891
4
GM12892
4
NB4
4
SU-DHL-6
4
femur
3
arm bone
3
leg bone
2
hindlimb muscle
2
muscle of leg
2
GM12873
2
GM18505
2
GM19099
2
GM19193
2
NAMALWA
2
blood
2
forelimb muscle
2
peripheral blood stem cell
1
GM10847
1
GM12872
1
GM12874
1
GM18526
1
GM18951
1
Karpas-422
1
SUDHL6
1
cerebrospinal fluid
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
fibroblast of arm
1
hindlimb muscle
1
proximal epiphysis of femur
1
proximal epiphysis of humerus
1
proximal epiphysis of tibia
1
skin - sun exposed (lower leg)
1
skin of forearm
1
whole blood
Organ
7
blood
7
bodily fluid
0
limb
Life stage
4
adult
Date released
3
September, 2022
2
February, 2021
1
June, 2020
1
May, 2021
Software used
2
macs
2
r
1
abc
1
chromhmm
1
encode-ccres
Lab
6
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
7
AMP
RFA
7
AMP
annotation_type!
binding sites
Showing 7 of 7 results
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Download
FileSet
DSR834AMF
released
Annotation file set
: Candidate regulatory elements for BSS00491 HAP-1 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR765USM
released
Annotation file set
: Target gene predictions for BSS00491 HAP-1 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR296VLY
released
Annotation file set
: Chromatin states for BSS00491 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR930MDC
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE HAP-1
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR956RSG
released
Annotation file set
: Histone modifications annotation for Blood HAP1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR155AOX
released
Annotation file set
: enhancer-gene predicton of HAP1 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR934MXE
released
Annotation file set
: Accessible chromatin annotation for Blood HAP1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP