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Citing CMDGA
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Annotation type
13
gene expression
8
accessible chromatin
histone modifications
3
target gene predictions
2
variant allelic effects
1
binding sites
1
candidate regulatory elements
1
chromatin state
Annotation Category
3
Target gene links
Annotation type Category
2
ATAC-seq
2
DNase-seq
1
ChIP-seq
1
H3K27ac ChIP-Seq
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
3
primary cell
1
in vitro differentiated cells
Biosample term
3
hepatocyte
1
hepatic stellate cell
Organ
3
epithelium
3
liver
Life stage
1
unknown
Date released
1
May, 2021
1
November, 2021
1
September, 2022
Software used
2
abc
1
r
Lab
1
AMP-T2D consortium
1
Bing Ren, UCSD
1
Jesse Engreitz, Stanford University
Project
2
AMP
1
ENCODE
RFA
2
AMP
1
ENCODE3
annotation_type!
histone modifications
Showing 3 of 3 results
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Download
FileSet
DSR361WHM
released
Annotation file set
: Target gene predictions for BSS00554 hepatocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR943ZIF
released
Annotation file set
: Target gene predictions of Hepatocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR604IOP
released
Annotation file set
: enhancer-gene predicton of hepatocyte-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP